Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01692 ATGTTAATTTTAGTGGGGAACAAACAGGGAACAATGAGTTCCCTCGCTTCTCCAGTGAGTTTGGGGAGCCTCACGGGTGTGAGTTCCTCTAGAAGCTTTCACTCTGTGGTGAAGAGGGTCTCTTTTTCCAGAGGAAATTGTAAGGGGAGAAAGAGATGGCATTGTTTATCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTATTGCTGATCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGTAGTAGTAGTAAGGGTGGAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCAAGGCCTGTGTTAAAGTCACCAGAGAATAAGGGTGACCCCATTTTGGGGCCCTCAAGGACTGCTGGAGATCCTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTTGGGGAGGTGTTAGAGAAGGCGGAAAAGCTGGGGAATTCCAAGGTGAATGGTGATAAGAATAATGGTTCAGTGAACAAACCAATAAGGAATAATGCTGGTGCTAGTCATAAGGCTGAGAAACCGGTGAATTTAGCAGCATCTCAGAAGTCTAAAACCTTGAAGAGTGTATGGCGTAAAGGGGATTCTGTTGCATCGGTGCAGAAGGTTGTGAAGGAAGTGCCAAAGCCTAATTATAACAAGAATGAAGAGGAGAAGCCTCAAACTAGAGGAGGGGAGAAGGTGGTTTCTGAAACTCGTGCTCCTCAACCACCTTTGAAACCCCAATTGCCTTCAAAACCTCAGCCACCTTCAAAACCTCAACCTGCGTTACTATCTAAACCTTCTATAGCTCCCCCACCTGTCAAAAAACCTGTTGTCTTGAGGGACAAAGGAGCAGCTGAAACATCAGTTAAATCCAAAGAAAAGAAGTCACCCATCTTGATTGACAAGTTTGCTTCCAAGAAACCAGTAGTTGATCCTCTAATCGCGCAAGCAGTTCTAGCACCTCCAAAACCTGGGAAGGCTCCTTCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCACTGGCTGGGGGAGGACGAAGAAGACGAATTTTGGATGATGAGGATGATGCTGATGTGATTCATGAGGCATCAGAGCTTGATGTCTCTATTCCTGGAGCCGCTACTGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCACGACTCCAGGCTGCTAGGGATGCAGCTCCTGTCAAAGTAGAAATTCTGGAGGTTGGTGACAGTGGTATGCTGGTGGAGGAATTGGCCTATTGTTTGGCAACCAGTGAAGGTGAAATCCTTGGTTATCTATACTCCAAGGGGATTAAACCAGATGGGGTACAAACACTTGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTTGAAGTCATAGATGCAGACCCGGTCAAAGTTGAAGGCTTAGTGAAGAAAAGAGAAATTCTTGATGAAGATGACCTCGATAAACTCAAAGATAGGCCTCCTGTTATCACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCCGCATCTGAAGCTGGTGGGATTACACAAGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGATGGCAAAAAGTTACCCTGTGTTTTCCTTGACACTCCTGGACATGAGGCATTTGGAGCTATGAGAGCTCGTGGAGCAAGTGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGGATTCGTCCTCAAACAAATGAAGCTATTGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGATCAAATCCAGAACGAGTGATGCAGGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTAGCACCCCGATGGTTCCGGTTATTGGATTGAATAATGTTCCTATTGCCGGTGATGAATTCGAGGTTGTTGAATCCCTTGATGCTGCACGTGAAAGGGCTGAGGCTCGTGCAGAGTCATTGCGAAACGAGCGCATTTCAGCAAAGGCAGGAGATGGCAAAGTCACCCTTTCTTCCTTAGCTTCAGCAGTTTCCTCAGGAAAGCTGTCTGGACTTGACTTGCATCAATTAAATATTATTTTGAAGGTTGATCTTCAGGTGCTGCCACAAGACAATGTTACATTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACTAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTGTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCAGATAACAAAGCAGTTGAGATTAGATTATACAGAGTTATTTATGAATTAATTGATGACGTACGAAATGCAATGGAAGGGCTCCTAGAACCAGTTGAGGAACAAGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTGGAAGACTTTGATGACTGGGAAGAAGGTGACATTCTTGAAGCCTTTAACACAATTGAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCACTGTAG 2571 0.4461 MLILVGNKQGTMSSLASPVSLGSLTGVSSSRSFHSVVKRVSFSRGNCKGRKRWHCLSLSVCRYSVTTTDFIADQGNSVSLDSNSSSSSSKGGDDGAGFVLKPPPRPVLKSPENKGDPILGPSRTAGDPGDVEERNKVIESLGEVLEKAEKLGNSKVNGDKNNGSVNKPIRNNAGASHKAEKPVNLAASQKSKTLKSVWRKGDSVASVQKVVKEVPKPNYNKNEEEKPQTRGGEKVVSETRAPQPPLKPQLPSKPQPPSKPQPALLSKPSIAPPPVKKPVVLRDKGAAETSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPSPGKFKDDFRKKGALAGGGRRRRILDDEDDADVIHEASELDVSIPGAATARKGRKWSKASRKAARLQAARDAAPVKVEILEVGDSGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPVKVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGSNPERVMQELSSIGLMPEDWGGSTPMVPVIGLNNVPIAGDEFEVVESLDAARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIIVGFNVKAPGSVKSYADNKAVEIRLYRVIYELIDDVRNAMEGLLEPVEEQVNAGLECGLGLEDFDDWEEGDILEAFNTIEKKRTLEEASASMAAAVEGVGVAL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01692 856 MobiDBLite consensus disorder prediction 75 132 - -
Vimu4g01692 856 MobiDBLite consensus disorder prediction 331 352 - -
Vimu4g01692 856 NCBIfam small GTP-binding protein domain 496 619 IPR005225 GO:0005525
Vimu4g01692 856 MobiDBLite consensus disorder prediction 322 352 - -
Vimu4g01692 856 Gene3D - 709 801 IPR036925 -
Vimu4g01692 856 MobiDBLite consensus disorder prediction 281 302 - -
Vimu4g01692 856 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 494 673 IPR000795 GO:0003924|GO:0005525
Vimu4g01692 856 SUPERFAMILY Translation proteins 802 836 IPR009000 -
Vimu4g01692 856 PRINTS GTP-binding elongation factor signature 498 511 IPR000795 GO:0003924|GO:0005525
Vimu4g01692 856 PRINTS GTP-binding elongation factor signature 566 577 IPR000795 GO:0003924|GO:0005525
Vimu4g01692 856 PRINTS GTP-binding elongation factor signature 550 560 IPR000795 GO:0003924|GO:0005525
Vimu4g01692 856 PRINTS GTP-binding elongation factor signature 602 611 IPR000795 GO:0003924|GO:0005525
Vimu4g01692 856 MobiDBLite consensus disorder prediction 75 92 - -
Vimu4g01692 856 CDD IF2_eIF5B 497 642 - -
Vimu4g01692 856 Gene3D - 491 673 IPR027417 -
Vimu4g01692 856 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 193 642 IPR015760 -
Vimu4g01692 856 FunFam Translation initiation factor IF-2 491 673 - -
Vimu4g01692 856 MobiDBLite consensus disorder prediction 244 275 - -
Vimu4g01692 856 Pfam Translation-initiation factor 2 718 789 IPR023115 -
Vimu4g01692 856 Pfam Elongation factor Tu GTP binding domain 499 625 IPR000795 GO:0003924|GO:0005525
Vimu4g01692 856 MobiDBLite consensus disorder prediction 149 302 - -
Vimu4g01692 856 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 706 806 IPR036925 -
Vimu4g01692 856 Coils Coil 658 685 - -
Vimu4g01692 856 MobiDBLite consensus disorder prediction 216 233 - -
Vimu4g01692 856 MobiDBLite consensus disorder prediction 155 171 - -
Vimu4g01692 856 FunFam Translation initiation factor IF-2 709 801 - -
Vimu4g01692 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 650 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01692 Vimu-Chr4 18378825 18393263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01692 473 611 Eukaryotic Initiation Factors Gene Family AT1G76810 42.384 3.88e-24 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01692 4 18378825 18393263 Vimu4g01692 4 18378825 18393263 ECH