Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01688 ATGGAAGAACCCACATTATTCTTCCCAGACACAGACCTGGATCTCAGTTTTACCAGCACCACCACCGACCGCACCAGCGCCCGAACCAGCCTCGCCCGAACCAGCAGCCTCACACTCAGCTTCAACGATCGTATCTCCACTTCCGAGCCCTCCATCTCAGTCGTAAACCGTCGCCCCCACCGGAGCTCCGACCCCCACTGGTCCGCCATCCAAGCCGCCACCATGCTCTCCTCCGACGGCCGCCTCCACCTCCGCCATCTTAAGCTGCTTCGCCACCTCGGCTCCGGCAACCTCGGCCGCGTCTTCCTCTGCCGCCTGCGCGACTACGACGGCGCCAACTTCGCCCTCAAAGTCGTCGACAAAGACCTCCTCACCCCCAAAAAACTCTCCCACGCGGAAACCGAGGCCGAAATCCTCCAAGCGCTCGACCATCCCTTCCTCCCCACGCTCTACGCACGCATCGACGTCTCGCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCACAGAACCGCCTCACCCTCTCGGTAGCGCGTTTCTTCGCCGCTGAGGTCCTCGTCGCCCTTGAGTACCTCCACGCGCTCGGAATCGTCTACCGCGACCTTAAACCCGAGAACGTTCTCTTGCGCGAAGACGGCCATGTCATGCTCTCGGATTTCGATCTCTGCTTCAAATCTGACGTGGCACCCAGCCTCACGCTTCAGACCCACAACAAACCCGCTCGTGTGGGCCCCACCAACGGTTGCTTCAGTTATAACCGTCTTCCCTACAAACAACACCACCAGACGTTCCTTGCAGAGTTCATTGCGGAACCCGTGGCAGCGTTTTCACGGTCTTGCGTCGGGACGCACGAGTACCTCGCGCCTGAGCTTGTCTCCGGTAACGGTCATGGTAACGGCGTTGACTGGTGGGCTTTTGGGGTTTTCCTCTACGAGTTGCTGTACGGGACAACGCCGTTTAAGGGCTCCAACAAAGAGAACACACTGCGCAACATAGCGTCGTATAAGGACCTGAGATTCGTCCAGTTGTCGGAAGGAGAAGAGGCTGGCATGACTGAGGCTAGAGATTTGATTGAGAAGCTGTTGGTGAAGGATCCAAGGAGGAGGCTAGGGTGCGCCAAGGGTGCCACTGATGTTAAACGACACCCATTTTTTGACGGCATTAAGTGGCCCTTGATTAGAACTTACCGGCCACCGGAAGTGAAGGGGTTGGTGAGAAGGAACAGGTCGCACGTGAGTGGTCACGTGAGTTACAGGAGGAAGAGGTGGTCGTGGAAGAGACTTTCTCATGTCCTTCGGAAATGTAATAGTAATAATAATAACAATTATTATCACTATGTTGATAGTTATAAGGTTAATTAG 1395 0.5649 MEEPTLFFPDTDLDLSFTSTTTDRTSARTSLARTSSLTLSFNDRISTSEPSISVVNRRPHRSSDPHWSAIQAATMLSSDGRLHLRHLKLLRHLGSGNLGRVFLCRLRDYDGANFALKVVDKDLLTPKKLSHAETEAEILQALDHPFLPTLYARIDVSHYTCLLIDYCPAGDLHSLLRKQPQNRLTLSVARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVAPSLTLQTHNKPARVGPTNGCFSYNRLPYKQHHQTFLAEFIAEPVAAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFLYELLYGTTPFKGSNKENTLRNIASYKDLRFVQLSEGEEAGMTEARDLIEKLLVKDPRRRLGCAKGATDVKRHPFFDGIKWPLIRTYRPPEVKGLVRRNRSHVSGHVSYRRKRWSWKRLSHVLRKCNSNNNNNYYHYVDSYKVN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01688 464 Pfam Protein kinase domain 89 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01688 464 Gene3D Transferase(Phosphotransferase) domain 1 171 237 - -
Vimu4g01688 464 FunFam Serine/threonine-protein kinase OXI1 286 414 - -
Vimu4g01688 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vimu4g01688 464 SUPERFAMILY Protein kinase-like (PK-like) 62 421 IPR011009 -
Vimu4g01688 464 Gene3D Phosphorylase Kinase; domain 1 86 170 - -
Vimu4g01688 464 PANTHER FLIPPASE KINASE 1-RELATED 29 414 - -
Vimu4g01688 464 SMART serkin_6 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01688 464 Gene3D Transferase(Phosphotransferase) domain 1 289 410 - -
Vimu4g01688 464 FunFam Serine/threonine-protein kinase OXI1 171 238 - -
Vimu4g01688 464 ProSiteProfiles Protein kinase domain profile. 87 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01688 464 CDD STKc_phototropin_like 94 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01688 Vimu-Chr4 18324672 18326142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01688 1 458 AGC Kinase Gene Family AT3G14370 66.109 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu4g01688 Pkinase 1.4e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01688 4 18324672 18326142 Vimu4g01688 4 18324672 18326142 ECH