Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01652 TTGCGGCGGCGGACGGCGTCGTTGATGGACCTGCAGATGACTTGGCAGCCGAGTCTCCTGAGTCAGAAACGCAAAACCGGTCCTCCTATAGGGCTCCGTAACCTGGGCAACTCGTGCTACCTCAACAGCGTCCTCCAGTGTCTCACATACACTCCTCCTCTCGCCAATTTCTGTCTCACTCTCCAACACTCTTCTCTCTGTAACCGGCTCTTCAATTCTCGTGATTTCTCTGCGTCTACGTGTCCGTTCTGCATACTTGAGAAGCAGATTGCGCGTTCACTAAAATTGGATCTCTCGCACGACGCGCCTTCTAAGATCCAGAGCTGTATACGGATCTTTGCCGAGCACTTCCGCTGTGGCCGCCAGGAAGACGCGCACGAGTTCCTCCGGTACGTAATCGACGCCTGCCACAATACCTGCCTCCGCCTCAAGAAGCTCCACCGCAAAGGCGGAGACGCTAATGGAGGCGGCGGAGACGGTGGCGGGAGTACGGTGGTAAAGGAGATTTTCGGTGGTGCCTTGCAGAGTCAGGTGAAGTGTCTGTGCTGTGGATATGAGTCGAATAAGGTTGATGAGATAATGGATATCAGTCTTGATGTTTTCCATAGTAACTCGCTTCAAGACTGCATGCAAAAGTTCTTTCAGCCCGAGGTTTTAGATGGCAACAATAAGTACAAGTGTGATAGTTGTAAGAAATTGGTGGCGGCTAAGAAGCAAATGTCCATACTTGAAGCACCTAACATCCTTGTGATACAACTAAAGAGATTTGAGGGCATATTGGGTGGCAAGATTGACAAGGCTGTTGCATTTGAAGAGGTTTTGGTTCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCACAGCCAGAATATAAGCTCTTTGGCACTATTGTGCATTCAGGCTACTCCCCCGAATCTGGTCATTACTATGCTTATATAAAGGATGCAATGGGTCGGTGGTATTGCTGTGACGATTCTAGTGTATCAGTTGCAACCCTGCAAGAAGTTTTGTCAGAAAAGGTTTATATTCTTTTTTTCTCTCGAACTAATCAAAGGCCAGTGTCAAGTAGTAATTCTCTTGCTTCAAACGGTGTAAAGCCTTATTTCAATGGGAGCCAAGCATCTGAATTTTCAAAGGTTGGTGTACCACTGAAAGATGTGCATGCAAAGTCAAGTTCTGAGCTATCTCCTTGGAAGGATATGCCAAGTGTAGCTAAGACTGCTAAAGTACCTTCCAGCTCACGAGTTAAGTTTGACATTAATGGAGGTTCTACTTCCAAAAGAAGTCCTGCTCCTCCAAGTGTGAATGGGAAAGTTGATGTTTCTAGGAATCAGCCTTTATTAATAAATGGACATGTCAAAGATTCAGAGTCTTTGGAAAATGGTAAGAAAGATCCTTCATCATTACCTGCCAGGAATGGTATTGACAAAAATAAAGTTGATGTTGACAAATTCAAAAGAAAGGAGTCAACATTTACAAATGGCCACAGTGATAATCAGATGGTTGATATCCATTCTGTAAAGTCGGATCCCAGGGAAGATACCGATAGAAGCAGGGTAATAGCAGGTAAAGGTTCTGACAACTTTAAGCTTGAAAACAATGGCCTCAGCAATAAACCCAAAATATTGGGGAGTAAGAGAAAGGTACACGAAGACCCATTCATTTTACTTGCACATGATGGTCAGTCTCAAGCAAAAGTTCAAAAACTGAAAGACAATCTTGTGAAAGAGGCGAAGTCACATTTGATATCCTGTGGTTGGACAAATGAGGTCTATGAATTTATGCGCTCTAAGTTACGTGCACAAGAAGATGGAAATTTGGAGAATGGAGATGAAACAAGGTATGGTTGA 1851 0.4462 MRRRTASLMDLQMTWQPSLLSQKRKTGPPIGLRNLGNSCYLNSVLQCLTYTPPLANFCLTLQHSSLCNRLFNSRDFSASTCPFCILEKQIARSLKLDLSHDAPSKIQSCIRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLHRKGGDANGGGGDGGGSTVVKEIFGGALQSQVKCLCCGYESNKVDEIMDISLDVFHSNSLQDCMQKFFQPEVLDGNNKYKCDSCKKLVAAKKQMSILEAPNILVIQLKRFEGILGGKIDKAVAFEEVLVLSSFMCKASQDPQPEYKLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCDDSSVSVATLQEVLSEKVYILFFSRTNQRPVSSSNSLASNGVKPYFNGSQASEFSKVGVPLKDVHAKSSSELSPWKDMPSVAKTAKVPSSSRVKFDINGGSTSKRSPAPPSVNGKVDVSRNQPLLINGHVKDSESLENGKKDPSSLPARNGIDKNKVDVDKFKRKESTFTNGHSDNQMVDIHSVKSDPREDTDRSRVIAGKGSDNFKLENNGLSNKPKILGSKRKVHEDPFILLAHDGQSQAKVQKLKDNLVKEAKSHLISCGWTNEVYEFMRSKLRAQEDGNLENGDETRYG 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01652 616 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 291 309 IPR018200 GO:0004843|GO:0006511
Vimu4g01652 616 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 30 349 IPR028889 -
Vimu4g01652 616 MobiDBLite consensus disorder prediction 391 518 - -
Vimu4g01652 616 Pfam Ubiquitin carboxyl-terminal hydrolase 30 346 IPR001394 GO:0004843|GO:0016579
Vimu4g01652 616 CDD Peptidase_C19E 29 347 - -
Vimu4g01652 616 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 27 352 - -
Vimu4g01652 616 MobiDBLite consensus disorder prediction 476 493 - -
Vimu4g01652 616 FunFam Ubiquitin carboxyl-terminal hydrolase 25 24 351 - -
Vimu4g01652 616 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 31 46 IPR018200 GO:0004843|GO:0006511
Vimu4g01652 616 MobiDBLite consensus disorder prediction 417 443 - -
Vimu4g01652 616 Gene3D Cysteine proteinases 24 351 - -
Vimu4g01652 616 SUPERFAMILY Cysteine proteinases 23 348 IPR038765 -
Vimu4g01652 616 MobiDBLite consensus disorder prediction 503 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01652 Vimu-Chr4 17853399 17861041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01652 29 353 Miscellaneous Gene Families AT2G24640 37.952 1.85e-61 210
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01652 4 17853399 17861041 Vimu4g01652 4 17853399 17861041 ECH