Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01638 TTGTGTTTCTCTTCCATTTCCGGTCTAGAAATACCATCTTTAGGAGTGTATTGTTGCAAATTGCTGAAGGGTTTGGTGGGGTTGGTGACTTTGATTTCCATGGCTGCGGTTGCTGAGATTCCCGTTGATGCCAACAAAATGGATTCAAAACCTAAGGCTGAATTGGCTGAATCTGAATTCAGTGTCCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCAAAGGAGTTTTTTCCTTCATCATATTCTCCCAATCATGATCATCGTCTTCAGGGCTTTAATCAGCTCTCACCAACACACTTTATGGTCAACTCTAAGCCTTCTGCTAATGAGAATTTCGCAAACAATCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGAAGGAGGGTGAGTGGAAGATCACTAAAGGCTCAAAGAGAAGATAGCATTAGAAGAACAGTTTATGTTTCTGATATTGATCAGCATGTTACTGAGGAGAGGCTTGCAGCATTATTCAGCAGTTGTGGACAACTAGTCAAAGCACTTCTTTCCCTTTTGTTTCAATTTACGGTTACACTCATTCTTGAGTACGATTATGTTGGTTTTGAGGCTTTGGTTGCTGTAATTGATTGCCGAATTTGCGGTGACCCACACTCAGTTCTTCGTTTTGCCTTTGTTGAGTTTGCAGATGAGTATGGTGCTAGAACAGCTTTAAACCTTGGTGGTACTGTACTTGGATACTATCCAGTGAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGATGATGAACGCGAAATGTGTGCCCGAACTGTCTATTGTACAAATATTGATAAGAAGGTTTCACAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAGGTTACGCGCCTGAGGCTTTTGGGGGACCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTGTTGCACTAAACTGTAGTGGGATGCTCTTGGGAACTCAGCCTATAAGGGTAAGTCCTTCAAAGACTCCTGTGAGGCCAAGGGTCACTCGTCCGGCATCCCATTAA 1089 0.4242 MCFSSISGLEIPSLGVYCCKLLKGLVGLVTLISMAAVAEIPVDANKMDSKPKAELAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRLQGFNQLSPTHFMVNSKPSANENFANNRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQLVKALLSLLFQFTVTLILEYDYVGFEALVAVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIVALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01638 362 FunFam Polyadenylate-binding protein-interacting protein 10 268 346 - -
Vimu4g01638 362 Gene3D - 262 356 IPR012677 -
Vimu4g01638 362 MobiDBLite consensus disorder prediction 110 137 - -
Vimu4g01638 362 SMART rrm1_1 148 248 IPR000504 GO:0003723
Vimu4g01638 362 SMART rrm1_1 275 346 IPR000504 GO:0003723
Vimu4g01638 362 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 68 356 - -
Vimu4g01638 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 350 IPR000504 GO:0003723
Vimu4g01638 362 Gene3D - 105 253 IPR012677 -
Vimu4g01638 362 SUPERFAMILY RNA-binding domain, RBD 265 356 IPR035979 GO:0003676
Vimu4g01638 362 SUPERFAMILY RNA-binding domain, RBD 107 250 IPR035979 GO:0003676
Vimu4g01638 362 CDD RRM2_CID8_like 270 351 IPR034825 -
Vimu4g01638 362 Pfam Ataxin-2 C-terminal region 68 83 IPR009818 -
Vimu4g01638 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 252 IPR000504 GO:0003723
Vimu4g01638 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 343 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01638 Vimu-Chr4 17670150 17676220 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01638 4 17670150 17676220 Vimu4g01638 4 17670150 17676220 ECH