Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01629 ATGGCCTCAGCCGCTGCCCCTACCACTTTCTCTCTGCTCCACTCCGCCTCCTCCACCTCGTCTTCCTCGCGCGTGCAGCTCTCCTCCTCCCTCCGCGTTCGCCCGCTCACGCGCTACCTGGGATTCAGGGCGGCCGACCCGCTGCTGGCGGCCAATGTGGCGGCGCGGGTGGCGGCGGTAAGGGTCGGGAGGGGCAGTAGAGGGGTGGTGTCGATGGCTAAGAAGAGCGTGGGCGACCTCACTACTGCGGACTTGAAAGGAAAGAAGGTGTTCGTGAGGGCAGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACTGACGACACCAGAATCCGAGCCGCCATTCCCACCATCAAATACCTCGTTGAAAACGGCGCCAAAGTCATCCTCTCTAGCCACTTGGGGCGACCGAAGGGTGTCACTCCCAAATACAGCTTGGCTCCTCTTGTACCTCGGATTTCTGAACTCCTTGGTTTCCCGGTTGTCAAGGCTGAGGATAGTATTGGTCCAGAAGTGGAAAAGTTGGTGGCTTCTCTTCCAGATGGAAGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCTGAGCATGCAAAAAAGCTTGCCTCTCTAGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCATAGGGCACATGCATCAACAGAGGGGGTTACTAAATACTTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGATTACCTTGTTGGGGCAGTATCAAACCCAAAAAGACCATTTGCTGCCATTGTTGGTGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTTTAGAAAAGGTTGATATCCTTCTTCTTGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTTCAGTGGGTTCTTCCCTTGTAGAGGAAGATAAATTGGATCTTGCTACATCACTACTTGCAAAAGCCAAGGAAAAGGGGGTGTCTCTCTTGTTACCAAGTGATGTGGTGATTGCAGACAAATTTGCTCCCGATGCAAATAGCAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACAACCAAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAATTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCCAAGAAGCTAGCTGACCTCAGTCAAAAGGGGGTCACCACGATTATTGGAGGAGGAGATTCTGTTGCAGCTGTAGAGAAAGTTGGAGTTGCCAATGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCTGGAGTTCTTGCTCTTGATGAAGCCACACCAGTCCCTGTGTAA 1431 0.4976 MASAAAPTTFSLLHSASSTSSSSRVQLSSSLRVRPLTRYLGFRAADPLLAANVAARVAAVRVGRGSRGVVSMAKKSVGDLTTADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLVENGAKVILSSHLGRPKGVTPKYSLAPLVPRISELLGFPVVKAEDSIGPEVEKLVASLPDGSVLLLENVRFYKEEEKNDPEHAKKLASLADLFVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPSDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTKTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSQKGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEATPVPV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01629 476 Gene3D - 19 143 IPR015824 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 84 100 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 106 128 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 446 463 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 211 233 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 423 434 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 183 198 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 242 264 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 387 412 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 PRINTS Phosphoglycerate kinase family signature 265 284 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 FunFam Phosphoglycerate kinase 244 460 - -
Vimu4g01629 476 FunFam Phosphoglycerate kinase 15 143 - -
Vimu4g01629 476 PANTHER PHOSPHOGLYCERATE KINASE 74 471 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 ProSitePatterns Phosphoglycerate kinase signature. 89 99 IPR015911 GO:0004618|GO:0006096
Vimu4g01629 476 PIRSF Pgk 70 475 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 Gene3D - 259 446 IPR015824 GO:0004618|GO:0006096
Vimu4g01629 476 Pfam Phosphoglycerate kinase 82 460 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 Hamap Phosphoglycerate kinase [pgk]. 79 470 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 Gene3D - 145 471 IPR015824 GO:0004618|GO:0006096
Vimu4g01629 476 CDD Phosphoglycerate_kinase 80 470 IPR001576 GO:0004618|GO:0006096
Vimu4g01629 476 SUPERFAMILY Phosphoglycerate kinase 79 470 IPR036043 GO:0004618|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01629 Vimu-Chr4 17500371 17503942 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01629 4 17500371 17503942 Vimu4g01629 4 17500371 17503942 ECH