Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01619 ATGGATAAATCAGAGGGGACTCCGCAGCGGCAACAGCAACAGCAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAACCAAATGACCTATTCTCACTACCAGACTGCTCCCGTGGTGGCTGCTGGCACACCTGCTGTAGCTGTTCCTTCCCCAACACAGGCTCCTGCTGCCTTCTCTAGTTCTGCCCACCAGCTTGCTTACCAGCAAGCTCAACATTTCCACCATCAACAACAACAGCATCAACAACAGCAGCTGCAAATGTTCTGGTCTAATCAAATGCAAGAAATCGATCAAACCATTGACTTTAAAAATCACAGTCTTCCTCTTGCTCGAATTAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAATGATATAGCAGCGGCTATTTCAAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGACGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCCTCTATTCCATTAGTGGGTTCTCCTGCTGATATGCCCTATTACTATGTCCCTCCACAGCATCCTGTGGGACCTCCTGGGATGATCATGGGAAAGCCAGTTGATCAAGCAGCGCTATATTCTACTCAGCAGCCTCGACCTACCATGGCTTTCATGCCATGGCCCCATACACAACCCCAGCCACAGCAACCACCCCAACAACAACAGCAAACAGATTCATGA 813 0.4576 MDKSEGTPQRQQQQQQQHVMGVAAGANQMTYSHYQTAPVVAAGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIDQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKASIPLVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAALYSTQQPRPTMAFMPWPHTQPQPQQPPQQQQQTDS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01619 270 SUPERFAMILY Histone-fold 64 179 IPR009072 GO:0046982
Vimu4g01619 270 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g01619 270 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
Vimu4g01619 270 FunFam Nuclear transcription factor Y subunit gamma 72 185 - -
Vimu4g01619 270 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 263 - -
Vimu4g01619 270 Pfam Core histone H2A/H2B/H3/H4 71 170 IPR007125 GO:0003677
Vimu4g01619 270 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01619 Vimu-Chr4 17385827 17390402 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu4g01619 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01619 4 17385827 17390402 Vimu4g01619 4 17385827 17390402 ECH