Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01609 TTGCTTGCCACGTGTCCTCTTAGGAATATGGAGGAGAGTGGTGGCGGACCCCGCCCAAGGGAACCGCTTCTGGTGGCGGCGGAGGAAGACGTTGCAAAAGCTTCCTGGAGACTTAACTTGAAAGAGTTTCGTTTGCCAAGCCAAATAGATGATCATCAACACAAACGATGCTTCACTTTTCAGAGTCTTCTTTGTAAGCCAATTTATGGATTTGCAAACATACTCCCTAACCTCTCTGTTAATTTGTGTGTTTCAGGGAAGACACGCAAAGTGGCAGAATATTACAAGCAGCAGGAGAGACTCCTTGAAGGATTTACTGAGATGGAGACTATGACTGAAACGGGTGGTTTCCCTGGAGCTCTCTCTGAGGATGAAATGAAGCAACTAGCAAAGAGTGAGAGGATGGCAGTTCATGTCTCAAATATTTGTAACTTGGTGCTGTTTGCAGCAAAGGTTTACGCCTCAATTGCGAGCAGATCATTGGCAGTCATTGCCTCAACCATGGATTCTCTCTTGGATCTCTTGTCAGGGTTCATACTGTGGTTTACTGCTCATGCCATGAAAAACCCAAACCAATATCACTATCCAATTGGAAAGAAACGCATGCAACCAGTGGGTATCATTGTATTTGCATCAGTGATGGCAACCTTGGGGTTGCAGATTTTGATTGAATCTGCCCGGGAACTTATTTCCAAGTCTAAGCCTGACATGGATCCAACAAAACTCCATTGGATGATCGGGATTATGGTGGGTGTGACTATAGTGAAGTTCATTCTTATGGTGTACTGCCGAAGATTTAAAAATGAAATCGTTAGAGCATATGCACAAGATCACTTTTTTGATGTCATTACTAATTCTGTTGGATTAGCTGCTGCTGTTTTAGCTGTTAAGTTCTACTGGTGGATTGATCCAACAGGAGCTATTATCATAGCATTGTATACAATTAATACATGGGCAAGGACAGTGATTGAGAATGTTTGGTCACTCATTGGAAGGACAGCACCACCTGATTTTCTTGCCAAGTTAACTTACCTCATATGGAATCACCATGAGCAGATCAAGCACATAGATACTGTTAGAGCATACACCTTTGGTGCACATTACTTTGTGGAAGTTGACATTGTGTTGCCAGAAGACATGGTTCTTCATCTAGCACACAACATTGGTGAGACACTCCAAGAGAAGCTAGAGCAACTTCCAGAAGTTGAAAGGGCTTTTGTGCACATAGATTTTGAGTTCACTCACAGGCCAGAGCACAAGACCATGGTGTGA 1272 0.4324 MLATCPLRNMEESGGGPRPREPLLVAAEEDVAKASWRLNLKEFRLPSQIDDHQHKRCFTFQSLLCKPIYGFANILPNLSVNLCVSGKTRKVAEYYKQQERLLEGFTEMETMTETGGFPGALSEDEMKQLAKSERMAVHVSNICNLVLFAAKVYASIASRSLAVIASTMDSLLDLLSGFILWFTAHAMKNPNQYHYPIGKKRMQPVGIIVFASVMATLGLQILIESARELISKSKPDMDPTKLHWMIGIMVGVTIVKFILMVYCRRFKNEIVRAYAQDHFFDVITNSVGLAAAVLAVKFYWWIDPTGAIIIALYTINTWARTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEQIKHIDTVRAYTFGAHYFVEVDIVLPEDMVLHLAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTMV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01609 423 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g01609 423 FunFam Metal tolerance protein 11 136 329 - -
Vimu4g01609 423 FunFam Metal tolerance protein 11 332 412 - -
Vimu4g01609 423 Gene3D Cation efflux protein, cytoplasmic domain 334 411 IPR036837 -
Vimu4g01609 423 NCBIfam cation diffusion facilitator family transporter 136 410 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vimu4g01609 423 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 334 410 IPR036837 -
Vimu4g01609 423 Pfam Cation efflux family 139 329 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vimu4g01609 423 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 29 420 - -
Vimu4g01609 423 SUPERFAMILY Cation efflux protein transmembrane domain-like 132 331 IPR027469 -
Vimu4g01609 423 Pfam Dimerisation domain of Zinc Transporter 336 410 IPR027470 -
Vimu4g01609 423 Gene3D Cation efflux protein transmembrane domain 134 329 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01609 Vimu-Chr4 17256105 17258964 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01609 4 17256105 17258964 Vimu4g01609 4 17256105 17258964 ECH
Vimu4g01609 4 17256105 17258964 Vimu5g00899 5 12228200 12234448 PCT