Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01134 ATGTGTGAAGGAAGAAAAAAGTGTAATGAGCATGTTGTTGTTCCTTTTAGTGAAATCACACATTTCTTAATAGTGAAGCTGCAAACTACAGATAGGAAAGAAGGCAAAAAAGCTGTTAGATGTCATTATCAAAGGCTTAAAAAGGTGTGGGTAGAAGAGATGGCAATTGAGAGTTACCTCTCTATCATCCATGACCTTAATTATATCTCACCACTATCACTGCGTAGCAAGCATCAGCAAGCTCTCATAGGCTACACAGGGAATCTAATGAGGTTGCAATTGCAGGTTTTGGTATTTTTGGGATCAGCAGCAGTGGCAGAAGCAGAAGCAGAAGCAGAAGCAGAACACTCTCCGCAGCTGCTGATGAAGGCTCAACAAGAACTAAACAGAACCAAAGAGTACTACAATACTGCCATTCCAAGTACCAACCTCAACAAAACCTACAAGAAATCCATTGCAAGTGTAAAAGGAAAGGAATCTGAATCTCGGGCTGTAGACACGAGAATCAAAAAGGGAGAGGACTTATTTGGAGCGTATAAAGTTGTAGAAACTGCAAAGGGGAGTAGCTATGCAGAAGGCAGAGTAGAGAAGCTGAGGAATGGGGATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGGTTAGGCTCTCAGCCCACACAGCAATTCAGTTCTACGATGTTCAGGATCGCTTAGGGTATGACAGACCGAGCAAGGCCGTGGACTGGCTCATAAAGAAGGCCAAGAATGCCATTGACAAGCTCGCTGAACTTCCTCCGTGGCACCCTACTGCCAACGCTGCAGATGCAGAGAACAACCATACCAATGCAGGGTCTAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTATAATTTTCAGCTGCAACGGCAATTAGGTGAGGACCATGATAACCACCATTCAGTTTTCATCCCTGCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCCACCTCCTCCATCAATTTCCCAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCTCTCCACTCCTTCCAAGACCCTGGCCTGATTCATGGCCAGTCCCAAGCAGATGCAAACCAAACACAAACACCTTCCAATCACCAAACCCTCTTTTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTCTGACTTGGAACAATGATGCAGGCACGGATATGAACAGAACTGGGTTCATGGTCAACTCACCAGCGCTTCTAGGCCAAGGTGGTTCTGCTGCATATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGGCTTCTTCCTCAGAACATCACAAGTCACAGCCAATTCAACAGGCTTCCATCTTTGGCAGCAGGTTTCTGTCTGATGCATTGCCAGGGTTCTGCATCCCAGCTAGAATTCAAGGCGAGGATGGGAGCCATGTTGTTGGTCCCGACAAGACATCGTCTTCTTCTCCTAATTCTCATCATCGAACACAAACGTGA 1587 0.4663 MCEGRKKCNEHVVVPFSEITHFLIVKLQTTDRKEGKKAVRCHYQRLKKVWVEEMAIESYLSIIHDLNYISPLSLRSKHQQALIGYTGNLMRLQLQVLVFLGSAAVAEAEAEAEAEHSPQLLMKAQQELNRTKEYYNTAIPSTNLNKTYKKSIASVKGKESESRAVDTRIKKGEDLFGAYKVVETAKGSSYAEGRVEKLRNGDEEHWGRDCSSPRRAHCSVHRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPTANAADAENNHTNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHSVFIPAPIDTDAIAFFPTTTATSSINFPTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHGQSQADANQTQTPSNHQTLFSGSTQVGFEANYPRILTWNNDAGTDMNRTGFMVNSPALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSSEHHKSQPIQQASIFGSRFLSDALPGFCIPARIQGEDGSHVVGPDKTSSSSPNSHHRTQT 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01134 528 ProSiteProfiles TCP domain profile. 200 263 IPR017887 -
Vimu4g01134 528 MobiDBLite consensus disorder prediction 511 528 - -
Vimu4g01134 528 MobiDBLite consensus disorder prediction 503 528 - -
Vimu4g01134 528 Pfam TCP family transcription factor 222 304 IPR017887 -
Vimu4g01134 528 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 221 464 IPR005333 GO:0003700
Vimu4g01134 528 MobiDBLite consensus disorder prediction 450 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01134 Vimu-Chr4 9848660 9850970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01134 222 505 TCP Transcription Factor Family AT3G15030 39.143 2.81e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu4g01134 TCP 3.9e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01134 4 9848660 9850970 Vimu4g01134 4 9848660 9850970 ECH
Vimu5g00551 5 5817690 5818841 Vimu4g01134 4 9848660 9850970 PCT