Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00588 ATGGATCCTTCTAGTGAACAACCCCAGCAAATGTCTAGCCAGACAGTGGAGAAGAAACCAAGGCCTAATCCAGAACAAGCTCTGAAATGCCCAAGATGCGATTCCACCAGCACAAAATTTTGCTACTACAACAACTACAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGCGATCATCATCATCATCGTTAAAGAGGGATCATCATGATCAGAGTTTCAAACCCAATCTTAACCCACTCACTACATTCCCTCAGCTGTGTTATGGCTCCAATGACTTCACTCTAGCATTAGCAAGACTTCAAAAACAATCATGTGGGCAATTGGGTTACAACGACAGTGAAATTTCTGCTCCGGGGAACCCCACAGGCTCGTTTTGTGACATTCTGAGCAATTCAGGCATGAATCCCTACTCAGACCACCCTTCATTTTTGGAAGCAATTCGAAGTGGGTTCCTTGAAACGCAAAGCCATCTTCAGAATTTGTATTACATGTACGGAAACGGGGACATTGGGGAGGTAGATAATGGCAATTCTGGTGGAATTGGAATCAGTGAAGAGATGATGCTCCCTTATAATCAAGCGATGAGCAATGCAGCCAGTCAATCAGTGAGTGCATTACTGAAGCAAGAACAGTGTGGTGGCAGTGAGCAAAGTGAAAGGAAGCTGTTGGGGGGTTCGCCATGGCAGCTTAATGCAGACACAAACATTGGTGAAATTGATTCAGGAAGAGCAATTGAAAGTTGGAACAATTTCACATCTTCTTGGCATGGACTTCTCCAGAGTCCCCTAATGTAG 864 0.4479 MDPSSEQPQQMSSQTVEKKPRPNPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSLKRDHHDQSFKPNLNPLTTFPQLCYGSNDFTLALARLQKQSCGQLGYNDSEISAPGNPTGSFCDILSNSGMNPYSDHPSFLEAIRSGFLETQSHLQNLYYMYGNGDIGEVDNGNSGGIGISEEMMLPYNQAMSNAASQSVSALLKQEQCGGSEQSERKLLGGSPWQLNADTNIGEIDSGRAIESWNNFTSSWHGLLQSPLM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00588 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 195 IPR045174 GO:0003700|GO:0006355
Vimu4g00588 287 MobiDBLite consensus disorder prediction 73 99 - -
Vimu4g00588 287 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g00588 287 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Vimu4g00588 287 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Vimu4g00588 287 MobiDBLite consensus disorder prediction 1 30 - -
Vimu4g00588 287 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00588 Vimu-Chr4 4349170 4350385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00588 26 287 C2C2-Dof Transcription Factor Family AT2G28510 39.416 4.57e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu4g00588 zf-Dof 6.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00588 - - gmx:778104 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00588 4 4349170 4350385 Vimu4g00588 4 4349170 4350385 ECH
Vimu4g00588 4 4349170 4350385 Vimu5g01996 5 31762473 31763345 PCT