Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00471 TATGTATCAGCAACCTCAATAACTGCTCTTAAACAACATAGTCAATTCGGATTCCCGAAGATGGCTGAGAAAGAGACTATGTATTCATTAGGTGATTGGAGGAGAATACCAATTTACACTTTCTTTAAGGATGCAAGACTGGTTTTCAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTGCCTGCAGCAATGGCTTTGACTGCTGATCCTATTGCTTCGTTGGTTGACACAGCATTTATTGGCCAAATAGGGCCAGTAGAGCTTGCTGCTGTAGGAGTTTCAATAGCTCTCTTCAATCAAGTATCAAGGATTGCAATATTCCCACTTGTCAGTGTCACCACTTCTTTTGTGGCTGAGGAAGATACCCTTAGTGGAGCAAGTCCTCAGATAGAGGAGGGTAAATGCTTGGAAGCTGGTGGACCTGTGGATACTGAAACCAAAGAGTTATTACCACAGAGAGGTATCATACCATTCTACCATTCTTTTGTAATAGGTTTGGTTTCTGGCAAGTTTTCTTGGCTTCTGCTCAAGAGCAATGATCTATTGCTCTGTAGAAATGTTCACAATTCAGATTCTGTTGGTGAATCTTTGAATATAGTTAAGGAGGATCACAAGAGAAGGCATATCCCTTCAGCTTCATCGGCATTATTTATCGGTGGTGTCCTTGGCCTCATCCAAGCAATATTTCTTATATCTGCGGCAAAACCTTTATTAAACTTCATGGGAGTAACTTCTGACTCTCCTATGCTACACCCTGCACAACAGTATCTGAGATTGAGGTCCCTCGGTGCTCCTGCCGTTCTTCTCTCCTTGGCAATGCAAGGAGTGTTCCGAGGATTTAAAGACACGAAAACACCTTTATATGCAACTGTGGCAGGAGATGCAACTAACATAGCATTGGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATTGCCCACGTTATATCTCAGTACCTAATTTCAGCTATACTCCTATGGAGGTTGTTGCAACAAGTTGACCTTATACCTCCGGGCATAAAACATCTGCAATTAGACCGTTTTCTTAAAAATGGTTTTCTATTACTAATGAGAGTAGTCGCTGTAACATTTTGTGTGACATTGGCTGCATCATTAGCTGCACGGCAAGGATCAACGTCCATGGCTGCATTTCAAGTCTGTTTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTGGCAGTTGCAGGGCAGGCTATTCTTGCTGGTGCATTTGCTAATAAGGACTTCAACAGGGCATCGGCAACTGCATCCCGAGTTGTGCAGATGGGTTTAGTTCTAGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGTGCTAAAATATTTACAAAAGATGCTGATGTTCTCCACCTCATTCAAATTGGAATCCCGCCTTTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGAGCTTCTGATTTTGCATATTCAGCCTTCTCCATGGTTTTGGTGGCAATTCTAAGCATTATTTGTCTGCTTATTTTGTCATCCGCGGGTGGTTTCATTGGTATTTGGGTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGGATTGGAACAGGATCGGGACCTTGGGAGTTCCTAAGGAGCTCATAA 1677 0.4275 YVSATSITALKQHSQFGFPKMAEKETMYSLGDWRRIPIYTFFKDARLVFKADSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGASPQIEEGKCLEAGGPVDTETKELLPQRGIIPFYHSFVIGLVSGKFSWLLLKSNDLLLCRNVHNSDSVGESLNIVKEDHKRRHIPSASSALFIGGVLGLIQAIFLISAAKPLLNFMGVTSDSPMLHPAQQYLRLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDATNIALDPLFMFVFRLGVSGAAIAHVISQYLISAILLWRLLQQVDLIPPGIKHLQLDRFLKNGFLLLMRVVAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDFNRASATASRVVQMGLVLGLALAFILGTGLHFGAKIFTKDADVLHLIQIGIPPLNSLAFVFDGVNFGASDFAYSAFSMVLVAILSIICLLILSSAGGFIGIWVALTIYMGLRAFAGFLRIGTGSGPWEFLRSS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00471 558 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 24 557 IPR044644 -
Vimu4g00471 558 Pfam MatE 366 516 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g00471 558 Pfam MatE 214 306 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu4g00471 558 CDD MATE_DinF_like 54 547 IPR044644 -
Vimu4g00471 558 NCBIfam MATE family efflux transporter 64 527 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00471 Vimu-Chr4 3399378 3404250 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00471 4 3399378 3404250 Vimu5g00105 5 834618 839291 ECH
Vimu4g00471 4 3399378 3404250 Vimu4g00471 4 3399378 3404250 ECH
Vimu3g00384 3 3657960 3663507 Vimu4g00471 4 3399378 3404250 ECH
Vimu4g00471 4 3399378 3404250 Vimu5g02161 5 33028843 33032758 PCT