Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00302 ATGCAGGATCCAGCTTTGTTCCAGCCCTTGAAACCCCACTTTCCCGAACAAGAGCAGCTTAAGTGTCCCCGTTGCGATTCCGTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCGCAGCCTCGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCAGTGGGGGGTGGAAGCAGAAAGAACGCCAAACGATCATCCTCGTCCACCAACACCAAACGCGCTTCCCCGTCACCTGCTCCAGAACCCGACCCGACTCGAGTTTGCCCTAACCCGGTTGTTGGTGGTGGTGGGAATTTCGGTTCTCTTTTGGCATCGGGTGCTCATTTGGGGAACCTCTTGGTGGGTCTGAAATCAAGTGGGGCGAATCTAAACGCTGTGCAAATGGAAGAATTTGGGGAGAATGTTAGTTCGGGTCACCAGGCGGATCCTGGTTCTGGTCGGAACCCTGTGCTGGAGATTGAAAGGAATGGGAATGCAGCAAGTTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTACTAATGGGTGGTCTAACCTTGCAATTTTCACTCCTGGGTCTAGCTATGAAAATTTATGA 618 0.5 MQDPALFQPLKPHFPEQEQLKCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSTNTKRASPSPAPEPDPTRVCPNPVVGGGGNFGSLLASGAHLGNLLVGLKSSGANLNAVQMEEFGENVSSGHQADPGSGRNPVLEIERNGNAASFLSMQNGDSSCWNGTNGWSNLAIFTPGSSYENL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00302 205 MobiDBLite consensus disorder prediction 71 87 - -
Vimu4g00302 205 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Vimu4g00302 205 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vimu4g00302 205 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Vimu4g00302 205 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 120 IPR045174 GO:0003700|GO:0006355
Vimu4g00302 205 MobiDBLite consensus disorder prediction 61 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00302 Vimu-Chr4 2243449 2244066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00302 11 124 C2C2-Dof Transcription Factor Family AT1G51700 57.778 4.04e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu4g00302 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00302 - - gmx:100798927 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00302 4 2243449 2244066 Vimu4g00302 4 2243449 2244066 ECH
Vimu4g00302 4 2243449 2244066 Vimu11g02930 11 49064082 49064705 PCT