Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03590 ATGCAAAGCTTCAACCCAACCGAATCAGAATCAACCTCGCCACTCTATTCCCACTCTTCATTCATTCACCGGGGAAATGACGCCAACCCAAATCCCACGCGCTTCTCTGATCTTCAGCATTCTTTTCGGCAACACGATGCTGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCGAAGTCGAACAATATGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGAGGTGCAGAGTTCGCTTCGACGGTTGTAGGGTGTGTTGAGACAGAGTCTCAACACATGTATCAGAGAGGAAACAGTAGCGCCACCATGCCGATGGGGAACCAGTATGTTGAGAAATGGGCAGATGATAGCCAACACACTGAAGATACTTGCACAGACATCGACACCGATGATAAAAACCAATGTTTCTCTACCGTGTCTTGGGGCAATGGAGTTGGGGACGGAGCACTTGTAGTTGTGGACTCCCAGGATCAAAGTAAGACAAAGGTTAAACCTGAAGACCAGAAGACCGTGCGTAGGCTAGCTCAGAATCGGGAGGCAGCTAGGAAGAGTCGGCTGAGGAAAAAGGCATATGTGCAACAGTTGGAGAACAGTCGAGTTAGGCTTGCACAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGGAGTTCTTATTGCCAATGGAATCACCGCGGATAGAGGACATTCAGTTGTTGGAAATGGAGCTTTAGCATTTGACATGGACTATGCTCGGTGGGTGGATGAGCATCAAAGGCTGATCAATGATCTAAGATCAGCTATAAATTCTCGAATGGGTGATAATGAACTGCATGTTCTTGTTGATGGAGTCATGGCACATTACGATGAATTATTCAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACTCCTGCAGAAAGATGCTTCATATGGCTTGGTGGATTTCGTTCTTCTGAACTTCTCAAGATAGTTAGAAATCAGCTTGAGCCATTAACGGAAGAGCAGTTGATGGGCATTTACAATCTGCAACAGTCTTCCCAGCAGGCTGAGGATGCTTTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGATACACTTTCATCCTCCTCACAAGGATCCTCAGCTTCTGGAAATGTTGCCGAGTACATGGGTCAAATGGCAATTGCATTGGGCAAGCTTGCCACACTTGAGAGTTTCCTTCATCAGGCTGATCTCTTGAGGCAACAAACTCTACAACAGATGAGACGAATTCTGACCACCTTCCAAGCTGCGCGGGCACTACTTGTCATAAATGATTACGTTTCACGACTCAGAGCTCTGAATTCTCTATGGTTAGCTTGCCCTAGAGAGTACTAG 1389 0.4651 MQSFNPTESESTSPLYSHSSFIHRGNDANPNPTRFSDLQHSFRQHDAVDLSSSSVFGAKSNNMAVVASNLQCGTFNTNLGGAEFASTVVGCVETESQHMYQRGNSSATMPMGNQYVEKWADDSQHTEDTCTDIDTDDKNQCFSTVSWGNGVGDGALVVVDSQDQSKTKVKPEDQKTVRRLAQNREAARKSRLRKKAYVQQLENSRVRLAQLEQELQRARQQGVLIANGITADRGHSVVGNGALAFDMDYARWVDEHQRLINDLRSAINSRMGDNELHVLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEEQLMGIYNLQQSSQQAEDALSQGMEALQQSLSDTLSSSSQGSSASGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03590 462 Gene3D - 174 223 - -
Vimu3g03590 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Vimu3g03590 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Vimu3g03590 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Vimu3g03590 462 MobiDBLite consensus disorder prediction 1 36 - -
Vimu3g03590 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
Vimu3g03590 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Vimu3g03590 462 PANTHER TRANSCRIPTION FACTOR TGA9 99 461 - -
Vimu3g03590 462 Coils Coil 194 221 - -
Vimu3g03590 462 Pfam bZIP transcription factor 175 214 IPR004827 GO:0003700|GO:0006355
Vimu3g03590 462 FunFam BZIP family transcription factor 174 223 - -
Vimu3g03590 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03590 Vimu-Chr3 48639937 48643129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03590 12 461 bZIP Transcription Factor Family AT1G68640 55.484 2.81e-158 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu3g03590 DOG1 8.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03590 3 48639937 48643129 Vimu3g03590 3 48639937 48643129 ECH