Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03587 ATGTCTATGGCGGATGAACCACTCTATCCAATAGCAGTGCTTATAGACGAGTTGAAAAATGATGACATTCAGCTGCGGTTAAACTCTATTCGCAGGCTATCAACAATTGCACGGGCACTTGGGGAGGAGCGAACCCGTCGAGAATTAATTCCTTTCTTGAGTGAAAACAACGATGATGACGATGAGGTACTTCTTGCAATGGCAGAAGAGTTGGGAGTTTTCATTCCTTATGTTGGGGGAGTCGAACATGCTAGTGTGTTGCTGCCACCGCTGGAGACACTTAGCACTGTTGAGGAGACCTGTGTAAGGGATAAAGCTGTGGAATCACTTTGTAGAATTGGATCTCAGATGAGGGAGAGTGATTTAGTTGAATATTTTATACCATTAGTGAAGAGATTAGCAGCAGGTGAATGGTTTACTGCTCGAGTCTCTGCATGTGGGCTATTTCATATTGCATACCCTAGTGCACCAGAAACAGCAAAAACAGAGTTGAGATCAATATACAGTCAGTTATGTCAGGATGACATGCCTATGGTTAGAAGGTCGGCTGCATCAAATCTTGGTAAATTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCTGATGTCATGTCAATTTTTGAGGATCTAACTCAAGATGATCAAGATTCTGTGAGATTGTTGGCTGTGGAGGGCTGTGCTGCTCTAGGCAAACTATTGGAGCCACAAGACTGTGTTGCACATATTCTACCGGTTATTGTGAACTTCTCCCAAGTATTGCATAAGATAGTAAAGACCCTGCCTCAAGTCAGCATACTTACCCAGCCTTTTCCCAAATCATTCCTTACCTCCGTCACCCTTCAGACCTCAATTCATAATGGTGTGATCATGGATAAGGACGGATCGCATCAAGGAGGAGAAGCTATGGGTAAAGATAAAGAGAGGGAGGCAAAGGAGGAGCTCGACAGTAGAAACCTTCTTGTGCTCTCATCACATCACATTTCCCCAATCCGCAGTGATGCCTCCCTCTCTCTGTTATTTCCCTCCCTTATCAACCAAGTTGTTCTCTTCCATGCCTCCTTCTTTCTCTTATGCACTTTTAGGCCTTTATCCTTATCATTTGGCCATCATGGCTCTTCTATACACATTAGTTATGGGCTTATCAACGATTCAGCTGCCAAGCTATGTGCTTTAAAAGAATACTATGACAAGTCTTGGCGTGTGCGTTACATGGTTGCAAATCAGTTGTATGAACTTTGTGAAGCTGTAGGCCCTGAACCTACCAGTTCACTAGCTGGTATTTTGGATATTCATGATAGGATCTGGATCCTCTCCTGTTCAACGGAATTGGTACCTGCTTATGTGCGATTGCTCCGAGACAATGAGGCCGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAATTTTGTCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCATCAGATTCTTCACAGCATGTCCGTTCTGCTTTGGCTTCAGTGATAATGGGAATGGCACCAGTCTTAGGAAAGGTATGTGAAGCCTGTTATAAAGAGCCTGCATTGAAGGAAAGAAAGAGCCTTACTGCCAAATCTAGACTTACTGCAGTATCTGGTAGTTTTGATGCAAATATTAGTCTCAGTTCTACCTTGTCATCATTGCAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCACTTTTGAAGGATGAATTTCCTGATGTCCGCCTGAATATTATCAGCAAGCTTGATCAAGTGAATCAGGTTATCGGAATTGATCTGTTATCCCAATCTTTATTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTCCGGCTTGCAATTATAGAATATATACCCTTATTGGCAAGTCAGTTGGGGGTTGGGTTTTTTGATGACAAGCTTGGTGCTCTTTGCATGCAATGGTTGCAGGATAAGGTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAGGAATTTGGTCCTGATGGACTTGGGGACAGAGTGCAAAATCTTCCACTATTTGCAATTGCATGCGTCTAG 2082 0.4313 MSMADEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRRELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHASVLLPPLETLSTVEETCVRDKAVESLCRIGSQMRESDLVEYFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPETAKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADVMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQVLHKIVKTLPQVSILTQPFPKSFLTSVTLQTSIHNGVIMDKDGSHQGGEAMGKDKEREAKEELDSRNLLVLSSHHISPIRSDASLSLLFPSLINQVVLFHASFFLLCTFRPLSLSFGHHGSSIHISYGLINDSAAKLCALKEYYDKSWRVRYMVANQLYELCEAVGPEPTSSLAGILDIHDRIWILSCSTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLSIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKVCEACYKEPALKERKSLTAKSRLTAVSGSFDANISLSSTLSSLQEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPDGLGDRVQNLPLFAIACV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 565 603 IPR021133 -
Vimu3g03587 693 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 251 - -
Vimu3g03587 693 Gene3D - 381 686 IPR011989 -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Vimu3g03587 693 Pfam HEAT repeats 567 667 - -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 443 481 IPR021133 -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 87 125 IPR021133 -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 482 514 IPR021133 -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vimu3g03587 693 ProSiteProfiles HEAT repeat profile. 604 642 IPR021133 -
Vimu3g03587 693 Gene3D - 2 272 IPR011989 -
Vimu3g03587 693 SUPERFAMILY ARM repeat 8 676 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03587 Vimu-Chr3 48624091 48630427 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03587 3 48624091 48630427 Vimu3g03587 3 48624091 48630427 ECH