Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03581 ATGGCTACCGATGCCCGTGACTCGCGTCACAAGCATCGCCGATCACCCTCTCCGGAGGATGTGGACAGATCCTCGAAGCGCCACAAGCATCGCCACCGCCATCGCCACCGCCATCGCCACCGCCACGGTAGCAAAAAGCGCGAGGAAGATATTGAATTCGATGATCGAACCATTGCTGCTGTTCCTTCTCCAACTCCGCATAGACATCTCCCGGAGGACGATGTGGAGGAAGGAGAGATCCTCGATGATGAAGCTCTCGACAGTGAGGTAGGGAAAAAAGAGACGGAATCTGATGTCGAACCTGGTGAAATCAAGGTGACTGGAGATCGAGATGTTCAATCTGATAATCAAAATTCGGGACACTTCACTGTAAATCCAGAAACTAATGAGGACATCAGGGTTGATAAATTTATTAGCCCCGCAACCCATGCAGATGGTGTCTCTCCTAATCGTTTAAATGCTGAGACTCAAGATGGAAAGCATGCTACAGATGGTCTGGACAATGGTTATTTGAATCCTAAATCTTCCAAGGCGGATAAGTGGCGGAATGGGGAACTTGGACGTTTTAAAGGGAATGAGAAACTAAAAGGTGACTTTGATGCACTGGAGGCTGATGTTAGGAAAACACATTTCCATAGGAATTCATCATCCGAAAGTGGGGGAGACAAAGGTAGAATATCAGGAAGTTCTCCTTCTCATGGCAGATATAGAAGTCGATCAAGATCAATTGGTCATACAAGAGACAGGTCTCGTTCTCGTAGTGTCATAGATGAATATGTTCATTCCAAGAGAAGGCGCTCTGAATATGACTATGATGAGGAAAGAGTGAGGGCACGTGGAAGGGAACATGGTCATGGAAGTGTGGTAGATGATAGAAAGGAATACAGTAGTGGATATCACAATCGTGAGGCCCATGATAGAGATAGGAGTAGGGATAGAGACTTGTACAGAGAAAAGAAACAAGAGGAAACAAGCAGGGGTAAGGAGATTGAGAGGGACCGCCAAAGGGTAAAGGAACGTGAAAGGAGCCGTGAGAGATATAAAAGGGATGTAGAAAAAGATAGGAGCAGGGAAAGGGAGGATAGAGACAGGAGGCAAGAAAAGGAAAGAGATAGGAGCTGGGAGACGGTGTTTGAAAGGGATATGAGAAGGGAAAAGGAAAGAGATAGGAGTAGGGACAGAACAAGAGATGCTAAGAGAGATAGAGACTTGGAGAATGAAAGGGATGATAAGAATCGAGAAAGGGATAATATTAAGGAGAGGGCAAGGCGAGATGATAGATATAGACACAAAGATAGAGACACTGCAAATGGTAAAGATAAGCACGCTCGTCATGAAGATGGTAATGACAATGGAGATAAATATAGAAAACATTCGAGACATGAAGAAAATGATTACCATTGGGATAGAAAAAGAAATTCTGTAAAGGATTATACCTCAAGGGGGGGAAGTACTGCAGAAGTGGATGAAAGCAAACTAACAAGCAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCACTTACCTGACCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGCATCAGCAAGTAGAAGTGGATACAGACATTCAAACTGAAGCCTCTGAAGCACATGATGGTAAGAATGATGATGCCGATTATGTGGAGCCATCATTTGCTGTTGGAAAATCTCCTGAAAATGTGACTGTTGCTTCTCAGAAGATATCTCTTGCTGGAGGCCTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTACTGTGACGATATATTTGGGGAGACACCAACGGGAGTTCGAAAATCAGGAAAAGGTGACGGTTTAATGATTGAAAGGGTTGGCCTACATGACAACTGGGATGATGCAGAGGGATACTACAGCTATCGAATTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACACGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTGAAGGTGGGAAATGGTGAGCCAGAGGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTCCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCCTTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGACATAAAGCCAGATAATATGTTGGTAAACGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTCGGTAATGCAATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGGCATATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAGTTATATGTAGGTAAGGTTCTCTTCCCTGGGCTTACTAACAATGACATGCTACGACTTCACATGGAACTGAAGGGCCCTTTTCCAAAGAAGATGCTACGAAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCAACCGAGGAAGATCCTGTGACAAAAAAGGCCATAAAGCGGCTGATTCTCAACATTAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTTCCGGGGAAGATCCAAAAATGTTGGCCAATTTTAGGGATCTTCTGGAAAAAGCTGACAGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGAACAATGTTGCTGAAATTGACTCCCAAAATGATATACTGATATTTGTACATAATGATCCAATTGATATTGAGGAGTGTCATCACAGTTGTCAGCATGTTGAAGTGAAAAAGGGTGATGTCTCTCTACAGGCGTACACTTTACTGGCGGTTCTTTCAGTGGAATGTACTGTTTCTATTCACGAACTCACGTTAATTATTGTTGTTAGCTGGGTACATGAGTTAAGGGGAGGGAAGTGGTCAGTGCTGAACTTGCTTCCGCTTCTAGATACATGTGCCACTAGGCCATACACCTAG 3198 0.4312 MATDARDSRHKHRRSPSPEDVDRSSKRHKHRHRHRHRHRHRHGSKKREEDIEFDDRTIAAVPSPTPHRHLPEDDVEEGEILDDEALDSEVGKKETESDVEPGEIKVTGDRDVQSDNQNSGHFTVNPETNEDIRVDKFISPATHADGVSPNRLNAETQDGKHATDGLDNGYLNPKSSKADKWRNGELGRFKGNEKLKGDFDALEADVRKTHFHRNSSSESGGDKGRISGSSPSHGRYRSRSRSIGHTRDRSRSRSVIDEYVHSKRRRSEYDYDEERVRARGREHGHGSVVDDRKEYSSGYHNREAHDRDRSRDRDLYREKKQEETSRGKEIERDRQRVKERERSRERYKRDVEKDRSREREDRDRRQEKERDRSWETVFERDMRREKERDRSRDRTRDAKRDRDLENERDDKNRERDNIKERARRDDRYRHKDRDTANGKDKHARHEDGNDNGDKYRKHSRHEENDYHWDRKRNSVKDYTSRGGSTAEVDESKLTSSEVEPDDLEEDTLHLPDQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEVDTDIQTEASEAHDGKNDDADYVEPSFAVGKSPENVTVASQKISLAGGLGEGTPKSERSEDKYCDDIFGETPTGVRKSGKGDGLMIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKVGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLAYDHPLDIWSVGCCLYELYVGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTLITGSSGEDPKMLANFRDLLEKADSVTSSEPPIHHWQVNNVAEIDSQNDILIFVHNDPIDIEECHHSCQHVEVKKGDVSLQAYTLLAVLSVECTVSIHELTLIIVVSWVHELRGGKWSVLNLLPLLDTCATRPYT 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03581 1065 Coils Coil 330 350 - -
Vimu3g03581 1065 Gene3D Transferase(Phosphotransferase) domain 1 718 960 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 210 527 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 513 527 - -
Vimu3g03581 1065 SMART serkin_6 658 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 26 44 - -
Vimu3g03581 1065 SUPERFAMILY Protein kinase-like (PK-like) 645 907 IPR011009 -
Vimu3g03581 1065 FunFam serine/threonine-protein kinase PRP4 homolog 628 717 - -
Vimu3g03581 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 241 477 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 592 611 - -
Vimu3g03581 1065 Pfam Protein kinase domain 660 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03581 1065 FunFam Serine/threonine-protein kinase PRP4 homolog 718 960 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 178 198 - -
Vimu3g03581 1065 Gene3D Phosphorylase Kinase; domain 1 628 717 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 85 110 - -
Vimu3g03581 1065 PANTHER DUAL SPECIFICITY PROTEIN KINASE 376 952 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 220 237 - -
Vimu3g03581 1065 Coils Coil 401 424 - -
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 111 126 - -
Vimu3g03581 1065 ProSiteProfiles Protein kinase domain profile. 658 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 1 198 - -
Vimu3g03581 1065 CDD STKc_PRP4 657 952 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vimu3g03581 1065 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03581 Vimu-Chr3 48605018 48611675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03581 653 880 MAP Kinase Gene Family AT2G43790 33.197 6.31e-22 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vimu3g03581 Pkinase 7.2e-40 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03581 3 48605018 48611675 Vimu3g03581 3 48605018 48611675 ECH