Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03574 ATGACGGAATCTCGGAAACAACCGACTCCTAAACAGAGGCAGAAGCCTCATCACTCCGTCCAAGAGTCCAAAGCAATGAGAAAACTGCGAATTATTTATGACGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGGGGTGTTTCTGAAATCTAAAAAAGCAAAGAGAAACTTTTGTGAGATCCCTCTCCCACCCCTTCCTCAAACTTTCACCACTCCTGAAACCAGTTCCTTTGAGGTGAATAGCAACAGCAATGCAGTGAGGGTGAAGGTTTGCATTGAAGGTCAACCCCAGACAAAGAAGAGGGTTTTGACCCAAATCCCATCAACAAGGAGGAACACTTCTGGAAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTTCAGAGTACACGCATATGGCTCGGTACTTTCAACACAGCTGAAGAGGCTTCTCAAGCCTACGAGGCCAGAAGGCTTGAGTTTGAAGCCAAGGCCAGAGCCTACAAAAATGTTTCAGAGCCTTTGTCCACAACTTCTGATAAGAGCATATGCTGTAACTCTTCTGATGCTGCTGTGTCCGTGTCTGAGAAGTTTTCTACTACCTCTGATGACTCAGACGGTGTGTTGTCACATCCATCACCTTCTTCTGTGCTTGAGTTGGATTCTTCATCTTCCAAACCCATTGGCAATGACAATGTTTTGAGTGAGGAAGCTGTTGAGACTAATAATTTGGTTTCTGAATTTGCTGAACTTGAAATTCCAGATTTGAGTCTTTTGAACTTGCCATCACCATTCAATAGTGCTAATGCTGCTCTTGCTTCTGGGACTGAACCAGACTTTGGTCTTGATTTTGATTGGCTATCACTTGAGGATTATGGTCAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATACGCATTTGTGGGTTTGATAACAATGAGCCTAGTAAACTTCCTGATTTTGATTTTGGCGATTTCTGTGCTGAAGAGTTTGCTGGGTGGACGGAGGAGCCCCTCAACATACCTTGTGCCTAA 1047 0.4422 MTESRKQPTPKQRQKPHHSVQESKAMRKLRIIYDDPDATDSSDDESGVFLKSKKAKRNFCEIPLPPLPQTFTTPETSSFEVNSNSNAVRVKVCIEGQPQTKKRVLTQIPSTRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAKARAYKNVSEPLSTTSDKSICCNSSDAAVSVSEKFSTTSDDSDGVLSHPSPSSVLELDSSSSKPIGNDNVLSEEAVETNNLVSEFAELEIPDLSLLNLPSPFNSANAALASGTEPDFGLDFDWLSLEDYGQGFDDFGGLEDIRICGFDNNEPSKLPDFDFGDFCAEEFAGWTEEPLNIPCA 348
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03574 348 MobiDBLite consensus disorder prediction 1 37 - -
Vimu3g03574 348 MobiDBLite consensus disorder prediction 203 236 - -
Vimu3g03574 348 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Vimu3g03574 348 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 238 - -
Vimu3g03574 348 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Vimu3g03574 348 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vimu3g03574 348 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Vimu3g03574 348 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Vimu3g03574 348 CDD AP2 118 165 IPR001471 GO:0003700|GO:0006355
Vimu3g03574 348 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
Vimu3g03574 348 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Vimu3g03574 348 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu3g03574 Vimu-Chr3 48527230 48528276 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03574 21 347 AP2-EREBP Transcription Factor Family AT1G68550 34.925 3.72e-40 142
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g03574 AP2 2.9e-12 CL0081
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03574 3 48527230 48528276 Vimu3g03574 3 48527230 48528276 ECH