Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g03574 | ATGACGGAATCTCGGAAACAACCGACTCCTAAACAGAGGCAGAAGCCTCATCACTCCGTCCAAGAGTCCAAAGCAATGAGAAAACTGCGAATTATTTATGACGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGGGGTGTTTCTGAAATCTAAAAAAGCAAAGAGAAACTTTTGTGAGATCCCTCTCCCACCCCTTCCTCAAACTTTCACCACTCCTGAAACCAGTTCCTTTGAGGTGAATAGCAACAGCAATGCAGTGAGGGTGAAGGTTTGCATTGAAGGTCAACCCCAGACAAAGAAGAGGGTTTTGACCCAAATCCCATCAACAAGGAGGAACACTTCTGGAAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTTCAGAGTACACGCATATGGCTCGGTACTTTCAACACAGCTGAAGAGGCTTCTCAAGCCTACGAGGCCAGAAGGCTTGAGTTTGAAGCCAAGGCCAGAGCCTACAAAAATGTTTCAGAGCCTTTGTCCACAACTTCTGATAAGAGCATATGCTGTAACTCTTCTGATGCTGCTGTGTCCGTGTCTGAGAAGTTTTCTACTACCTCTGATGACTCAGACGGTGTGTTGTCACATCCATCACCTTCTTCTGTGCTTGAGTTGGATTCTTCATCTTCCAAACCCATTGGCAATGACAATGTTTTGAGTGAGGAAGCTGTTGAGACTAATAATTTGGTTTCTGAATTTGCTGAACTTGAAATTCCAGATTTGAGTCTTTTGAACTTGCCATCACCATTCAATAGTGCTAATGCTGCTCTTGCTTCTGGGACTGAACCAGACTTTGGTCTTGATTTTGATTGGCTATCACTTGAGGATTATGGTCAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATACGCATTTGTGGGTTTGATAACAATGAGCCTAGTAAACTTCCTGATTTTGATTTTGGCGATTTCTGTGCTGAAGAGTTTGCTGGGTGGACGGAGGAGCCCCTCAACATACCTTGTGCCTAA | 1047 | 0.4422 | MTESRKQPTPKQRQKPHHSVQESKAMRKLRIIYDDPDATDSSDDESGVFLKSKKAKRNFCEIPLPPLPQTFTTPETSSFEVNSNSNAVRVKVCIEGQPQTKKRVLTQIPSTRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAKARAYKNVSEPLSTTSDKSICCNSSDAAVSVSEKFSTTSDDSDGVLSHPSPSSVLELDSSSSKPIGNDNVLSEEAVETNNLVSEFAELEIPDLSLLNLPSPFNSANAALASGTEPDFGLDFDWLSLEDYGQGFDDFGGLEDIRICGFDNNEPSKLPDFDFGDFCAEEFAGWTEEPLNIPCA | 348 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g03574 | 348 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Vimu3g03574 | 348 | MobiDBLite | consensus disorder prediction | 203 | 236 | - | - | |
Vimu3g03574 | 348 | ProSiteProfiles | AP2/ERF domain profile. | 118 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 26 | 238 | - | - | |
Vimu3g03574 | 348 | Gene3D | AP2/ERF domain | 117 | 176 | IPR036955 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | PRINTS | Ethylene responsive element binding protein signature | 119 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | PRINTS | Ethylene responsive element binding protein signature | 141 | 157 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | SMART | rav1_2 | 118 | 182 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | CDD | AP2 | 118 | 165 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | SUPERFAMILY | DNA-binding domain | 118 | 165 | IPR016177 | GO:0003677 | |
Vimu3g03574 | 348 | Pfam | AP2 domain | 118 | 167 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu3g03574 | 348 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g03574 | Vimu-Chr3 | 48527230 | 48528276 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g03574 | 21 | 347 | AP2-EREBP Transcription Factor Family | AT1G68550 | 34.925 | 3.72e-40 | 142 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vimu3g03574 | AP2 | 2.9e-12 | CL0081 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g03574 | 3 | 48527230 | 48528276 | Vimu3g03574 | 3 | 48527230 | 48528276 | ECH |