Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03571 ATGCTCATCCACAGGGCAAGTGGGTCACCACCAGAAATCGCTTTGATTAGAAATTCACCCAATAAGAAAGCAGAGAATAGGATGAACTTTCTATCTTCTACCAATGAAAAATCAGATAAGGCGTTCCACCCTGGACCCCAAAGTTCACTCCCTTTCACTGTTAAGGGTCCCAAAAGTGCAAACCCAAACAATCTCTCCGTGTTAAATGGAATGCAAAAGCGTCTCCTTCTGATGAGTACAGCAAAGAACGCGGCAAACGCGGTTGGAGGCAAAACCGCAAGAGCATGCGACAGCTGCATAACCAAGCGGGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGTCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCTTTGGCTCGCCGACACGAAAGAGTCCGCTTGAAAACGGCATCGTACAAGTCCACCGACGAACAACAACAACAACCTCCCACGTGGCCCACTAAGAAAGCTCGAACTCCCAGACACGGGAAACACTCTCGTAGCAACAACCCCTTCCATCTTGTCCCGGAAGTGGGTTCCGAAGAGGTGAATTCCCATGACGAGAACGAGGAGCAGCTTCTTTACAGGGTCCCCATATTCGAACCTTTTGTTGCCGAGCTATGTGGGAATAACAGCTCTTCTCCTTCTTCGGTGACTTCAACTGATCAAGGAGTAGCAGCTGCTGTGGCCGAGGCCGAAAACAAAGGGGTCGAGAGCAATGTTTTTAATCGCGGTAATAATGAGATGGAAAACTTGCACGGGATGCTTCCTTCCGATGCAGAACTTGCGGAGTTTGCGGCTGATGTTGAGAATTTACTGGGTAGGGGGCTTGAAAACGAGTGTGTGGGGATGGAGGATCTGGGACTGATTGATGCGAAGGAGGAGGAGTGTTCGGTGGGTAGTGGGGAGGTGAAGGTGGAAGAAGAAGAGAGCCCTGAGATGGAGATGGAGATGGAGATGGAGATGGTGGGAAGAGATGTATCGTTTGAGTTTAGCTTTGATTACGATACGTGTGAAGAGGTGAAGGAGAAGGTTTGCGATTTGGAATTGGGGAAGGAGAAGGGGAATGAAGAAGAAGTGAGAGAGAATGATGAGGCGAAAAAGAAGAAGATATCGTTGCAGCTTGATTATGAGGCAGTGATTATCGCCTGGGCTAGCCAAAAATCTCCCTGGACCACTCCTGACAAGCCAAACTTGGACCCCGACCAGTTCTGGCACGAATGCATCGAAAGTTATGGAAGGGGAATTCATGATCCTTATGGTGAAGTGGGTGGATTTGGGATTCATCCAGTGATAATTGACGGAGGCAGAGAGGCAAGAGTGTCAAGGTACAGAGAAAAGCGGCGAACAAGGTTGTTCTCTAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCTGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGAGCTTCCTTTGCACCATCAACGTTTCATTAA 1479 0.4855 MLIHRASGSPPEIALIRNSPNKKAENRMNFLSSTNEKSDKAFHPGPQSSLPFTVKGPKSANPNNLSVLNGMQKRLLLMSTAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQPPTWPTKKARTPRHGKHSRSNNPFHLVPEVGSEEVNSHDENEEQLLYRVPIFEPFVAELCGNNSSSPSSVTSTDQGVAAAVAEAENKGVESNVFNRGNNEMENLHGMLPSDAELAEFAADVENLLGRGLENECVGMEDLGLIDAKEEECSVGSGEVKVEEEESPEMEMEMEMEMVGRDVSFEFSFDYDTCEEVKEKVCDLELGKEKGNEEEVRENDEAKKKKISLQLDYEAVIIAWASQKSPWTTPDKPNLDPDQFWHECIESYGRGIHDPYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPSTFH 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03571 492 CDD Bbox1_BBX-like 95 138 - -
Vimu3g03571 492 SMART bboxneu5 91 138 IPR000315 GO:0008270
Vimu3g03571 492 MobiDBLite consensus disorder prediction 141 179 - -
Vimu3g03571 492 Pfam CCT motif 441 483 IPR010402 GO:0005515
Vimu3g03571 492 ProSiteProfiles CCT domain profile. 441 483 IPR010402 GO:0005515
Vimu3g03571 492 Coils Coil 360 380 - -
Vimu3g03571 492 ProSiteProfiles Zinc finger B-box type profile. 91 138 IPR000315 GO:0008270
Vimu3g03571 492 MobiDBLite consensus disorder prediction 143 158 - -
Vimu3g03571 492 MobiDBLite consensus disorder prediction 36 61 - -
Vimu3g03571 492 Pfam B-box zinc finger 93 136 IPR000315 GO:0008270
Vimu3g03571 492 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 84 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03571 Vimu-Chr3 48486952 48488704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03571 82 483 C2C2-CO-like Transcription Factor Family AT1G25440 47.002 5.58e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu3g03571 zf-B_box 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03571 3 48486952 48488704 Vimu3g03571 3 48486952 48488704 ECH