Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03565 ATGGCTTTGTTGTTTCTTTACAGGAGACCAGAAGGAAACCCGTTAGATCTTAACAATTTGCCTGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCACCGGGGAAAGAAGGGTGTCATGGAAGTTGCTTTAATTGGATGGTTATGGTTGCAGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGGCTATGATCATACCCTTGCTGCACAAGGTGCACCTCACTTAGGTTCTCTGTTGTCTTTCAATTTTGAAGAAGAAGCAAGATGCTGCCAACCGATTGGAACGGGTGGTTATCACCCAACAGGAGATCCATCGGCACCTCTGAGATTTCCGAGGTACTTCTCAGGTTCATCCTCAACTCACATGCCGCCAGCAGCACCGGCACCAGTAGCACCACAGCCATACCTGTATGCCTCACCTACAAGGCCAGTGTCTTTTGGGTCATCACACTTCCCTCATCAGCATGCGGTGAATGATTACTATGTGGGTCATGTGATGAGTGGGAGTCACGGACACTATGTGGGAGGAGGAGGAGGAGAGAGCACAAGCAGTTACACATGCATTGGTGCACCGGTGGGACAAGGTGGTGGGTTTGGTAGTGGTGGTGGTGGTAAGGACGGGTCACTGCCACTGCATAATAATCAGGAGGAAGGGTTGAGTTGGGGAAGGGGGTATCCGGCAGGAGCACAGCATCGTTTGGATCCTCCGTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 858 0.5035 MALLFLYRRPEGNPLDLNNLPDEYSRDGKQVLEDHTSSPGKEGCHGSCFNWMVMVAGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQGYDHTLAAQGAPHLGSLLSFNFEEEARCCQPIGTGGYHPTGDPSAPLRFPRYFSGSSSTHMPPAAPAPVAPQPYLYASPTRPVSFGSSHFPHQHAVNDYYVGHVMSGSHGHYVGGGGGESTSSYTCIGAPVGQGGGFGSGGGGKDGSLPLHNNQEEGLSWGRGYPAGAQHRLDPPSAINRFQDGF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03565 285 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vimu3g03565 285 MobiDBLite consensus disorder prediction 237 285 - -
Vimu3g03565 285 PANTHER ZINC FINGER PROTEIN JAGGED 28 244 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03565 Vimu-Chr3 48432197 48434024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03565 8 235 C2H2 Transcription Factor Family AT1G13400 34.568 2.39e-17 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03565 3 48432197 48434024 Vimu3g03565 3 48432197 48434024 ECH