Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03556 ATGCCGGCGAAGGACGACAATTCCGACAAGGAGAAGTGCCTCGATCTCTTTCTGAAGATTGGTTTAGACGAGCGCACAGCTCGAAACACCGTCGCGAACAACAAAGTCACGGCCAATCTCACTTCCGTCATCAACGAGGCTGGTGTTACTGATGGATGCAGTCGAACGGTTGGAAATCTTCTTTATACGGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGTCCAACATTACTACAATACATTGTTTCTTCAAAGGTCAAAACAACTGCACAGTTAGATGCAGCCTTATCATTTCTTGCTACCACGGGCTTGGAGAATCTTGATTTGAAGACATTTGAAGAAGCTTGTGGTGTTGGCATTGAGGTTTCAACAGAAGATATCAAACAAGCTGTCAGTGAAGTTGTTGAGGAGAACAAGGCTACGATTTTGGAGCTTCGCTATCGAACAAATGTGGGTGAGTTGCTTGGCCATGTGCGCAAGAGGCTGCCATGGGGTGACGCAAAAGTTGCCAAGCAACTTGTTGATGCAAAACTATATGAACTACTGGGTGAAAGAACAGCAGCAGATGATGAAAAGCCATCTAGAAAGAAGAAGGAGAAACCGGCTAAAGTAGAGGATAAAGCACCTGTTGCTACTCCTGAAAAGTCACCTGAAGAAGATCTTAATCCATATTTAATATTTCCTAACCCAGAGGAAAATTTCAAGGTGCATACTGAGGTGCCTTTTAGTGATGGTAGTATTTTGAGATGTTGTAATACAAGGGCGCTTCTTGACAAACACTTGAAAGCAACAGGTGGAAAAGTTTTGACCCGCTTTCCACCTGAACCAAATGGATATTTGCATATTGGTCATGCAAAAGCTATGTTTATTGATTTTGGATTGGCAAAAGACAGGGATGGAGGTTGTTATCTGAGATATGATGATACAAATCCTGAAGCAGAAAAGAAGGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGTTGGAAACCATTCAAGATTACTTATACAAGTGATTACTTCCAAGAATTGTATGAATTGGCTGTGGAGCTCATAAAAAAGGGTCATGCGTATGTTGACCATCAGACACCTGATGAGATAAAGGAATATAGGGAGAAGAAAATGAACAGTCCTTGGAGAGACAGACCAATTTCAGAGTCACTGAAGCTCTTTGAGGATATGAAAAGTGGCCTTGTAGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAATTACAATATGTATGACCTTATTGCTTATAGAATTAAGTTTACTCCACATCCTCATGCCGGAGACAAATGGTGTATTTATCCAAGTTATGACTATGCTCACTGCATTGTTGATTCTCTAGAGAATATCACACATTCACTGTGTACACTTGAATTTGAGACACGTAGAGCATCATATTATTGGTTGTTGCATGCGTTAGGCATTTACCAGCCTTATGTATGGGAATATTCAAGATTGAATGTCTCTAACACAGTTATGTCGAAGCGTAAGCTGAATCGTCTAGTTACAGAGAAGTGGGTTGATGGGTGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACGCCCACTGCAATAAATGCTTTTGTTCGAGGAATTGGAATAACTAGAAGTGATGGCACTTTGATTTCCGTTGAACGCCTTGAATACCATGTTAGGGAAGAATTAAACAGAACAGCTCCTCGTGCAATGGTTGTCCTTAATCCTCTCAAGGTTGTTATTACTAATCTTGAAGCCAACTTAGCTATTGAGGTTGATGCAAAGTTATGGCCTGATGCAAAAGCTGATGATGCTTCTGCTTTCTACAAGATTCCATTTTCCAATGTTGTATATATTGAACGTTCGGACTTCCGGATGCAAGATTCGAAAGATTATTATGGTCTAGCTCCTGGGAAATCTGCTATACTCAGATATGCATTTCCTATAAAGTGCACTGAAGTGATTCTAGCTGACGACAATGAGACTATTATTGAAATTCGAGCTGAGTATGACCCTTCAAAGAAGACAAAGCCTAAGGGGGTTCTCCATTGGGTTTCTCAACCTTCTCCTGGAGTTGATCCATTAAAGGTGGAAGTCAGGTTGTTTGAGAGGCTATTCCTATCAGAGAATCCCGCCGAACTTGACAATTGGCTTGGCGATTTAAACCCTAATTCCAAAGTGATAATTCCGGGTGCTTACGGAGTGTCCTCCCTGCGGAATGCGAAAGTTGGGGACAATTTCCAATTTGAACGATTAGGCTACTTCGTAGTTGACCAGGACTCAACTCCAGAAAAACTTGTTTTTAATAGGACTGTCACTTTAAAGGACAGCTATAGTAAAGGTGGAAAGTAG 2382 0.4169 MPAKDDNSDKEKCLDLFLKIGLDERTARNTVANNKVTANLTSVINEAGVTDGCSRTVGNLLYTVATKYPANALPHRPTLLQYIVSSKVKTTAQLDAALSFLATTGLENLDLKTFEEACGVGIEVSTEDIKQAVSEVVEENKATILELRYRTNVGELLGHVRKRLPWGDAKVAKQLVDAKLYELLGERTAADDEKPSRKKKEKPAKVEDKAPVATPEKSPEEDLNPYLIFPNPEENFKVHTEVPFSDGSILRCCNTRALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIKKGHAYVDHQTPDEIKEYREKKMNSPWRDRPISESLKLFEDMKSGLVEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTPTAINAFVRGIGITRSDGTLISVERLEYHVREELNRTAPRAMVVLNPLKVVITNLEANLAIEVDAKLWPDAKADDASAFYKIPFSNVVYIERSDFRMQDSKDYYGLAPGKSAILRYAFPIKCTEVILADDNETIIEIRAEYDPSKKTKPKGVLHWVSQPSPGVDPLKVEVRLFERLFLSENPAELDNWLGDLNPNSKVIIPGAYGVSSLRNAKVGDNFQFERLGYFVVDQDSTPEKLVFNRTVTLKDSYSKGGK 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03556 793 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 276 287 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vimu3g03556 793 SUPERFAMILY Ribosomal protein L25-like 577 787 IPR011035 GO:0006412
Vimu3g03556 793 FunFam Glutamine--tRNA ligase cytoplasmic 9 122 - -
Vimu3g03556 793 SUPERFAMILY Nucleotidylyl transferase 269 583 - -
Vimu3g03556 793 FunFam Glutamine--tRNA ligase cytoplasmic 239 580 - -
Vimu3g03556 793 Gene3D - 123 192 IPR042559 -
Vimu3g03556 793 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 168 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vimu3g03556 793 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 173 242 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vimu3g03556 793 Gene3D Ribosomal Protein L25; Chain P 581 700 IPR020056 -
Vimu3g03556 793 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 577 768 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vimu3g03556 793 FunFam Glutamine--tRNA ligase 581 700 - -
Vimu3g03556 793 NCBIfam glutamine--tRNA ligase 270 790 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vimu3g03556 793 FunFam Glutamine--tRNA ligase cytoplasmic 701 786 - -
Vimu3g03556 793 PRINTS Glutamyl-tRNA synthetase signature 273 285 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vimu3g03556 793 PRINTS Glutamyl-tRNA synthetase signature 302 315 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vimu3g03556 793 PRINTS Glutamyl-tRNA synthetase signature 447 457 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vimu3g03556 793 PANTHER GLUTAMINE-TRNA LIGASE 19 787 - -
Vimu3g03556 793 MobiDBLite consensus disorder prediction 189 216 - -
Vimu3g03556 793 FunFam Glutamine--tRNA ligase cytoplasmic 124 192 - -
Vimu3g03556 793 Pfam tRNA synthetases class I (E and Q), catalytic domain 269 574 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vimu3g03556 793 MobiDBLite consensus disorder prediction 189 223 - -
Vimu3g03556 793 Gene3D HUPs 246 580 IPR014729 -
Vimu3g03556 793 Gene3D Ribosomal Protein L25; Chain P 702 786 IPR020056 -
Vimu3g03556 793 CDD GlnRS_core 269 579 - -
Vimu3g03556 793 Gene3D - 7 122 IPR042558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03556 Vimu-Chr3 48297995 48306888 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03556 3 48297995 48306888 Vimu3g03556 3 48297995 48306888 ECH