Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03546 ATGGAAACCCAACTTGACTACAAAGCCAAAAGACCAAACCCCACTTCCCCAACAAGCCTAAAGATCTTTGGCTTCAGCGTCCATGAAGACATCACCATGGAAGAGGAAGACGAGGTGGTCATTCATGATGACGTCGAAGACTCAACCACCAAGGCATCTTCCACTTCCCCATCTGCCTCGCCGGACTCCGCCGGTGCCGGTTCCGGACCTCCTTCCTCCGGCGACCGGAAATACGAGTGTCAATACTGCTGCCGAGAGTTCGCAAATTCACAAGCACTTGGTGGCCACCAGAACGCGCACAAAAAAGAGCGTCAACAATTGAAGCGTGCGCAATTACAGGCTACGCGAAACGCAGCCGTTTCCTTTGCGCGAAACCCCATGATCTCCGCCTTCGCCCCGCCGCCGCACCTGCTGGCTCCTCCGGGTTCCATGGTGGTCCCGGCAGCCCCGTGGGTGTACGTGCCGCCACGTGCCGCGCCGCCTCCCTTCCACGTGTCAGTATCGCACGGCTGTGCCTTCCCGTCTGCGAATGGCCACAACGGGTTGAGTAGTAGTAATAGTAACAACGTTACCATAACGGGTGTGAAGTCTGCGGGTGCAGGGATGTTTCCCTATGTTGGCGTTGTAGGTGATTCGCAATTAGCTTTGTCAACGGTGCAGGTGCAGGCCCGGGCCCACCACGCTACGGTTGATGGGCCCTCTTTGAGTAGGTTCTCCAAAGGGGATGGTGGGCCCAAATTTGATGATGCATGGGGCTTGGATTTGCACCTTAGCCTTGCGCCAGCTGCGCCGTGA 795 0.5711 METQLDYKAKRPNPTSPTSLKIFGFSVHEDITMEEEDEVVIHDDVEDSTTKASSTSPSASPDSAGAGSGPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFARNPMISAFAPPPHLLAPPGSMVVPAAPWVYVPPRAAPPPFHVSVSHGCAFPSANGHNGLSSSNSNNVTITGVKSAGAGMFPYVGVVGDSQLALSTVQVQARAHHATVDGPSLSRFSKGDGGPKFDDAWGLDLHLSLAPAAP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03546 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Vimu3g03546 264 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g03546 264 FunFam Zinc finger protein GIS3 66 128 - -
Vimu3g03546 264 MobiDBLite consensus disorder prediction 50 67 - -
Vimu3g03546 264 SUPERFAMILY beta-beta-alpha zinc fingers 74 105 IPR036236 -
Vimu3g03546 264 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Vimu3g03546 264 Gene3D Classic Zinc Finger 62 126 - -
Vimu3g03546 264 MobiDBLite consensus disorder prediction 34 75 - -
Vimu3g03546 264 PANTHER ZINC FINGER PROTEIN 5 13 263 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03546 Vimu-Chr3 48236342 48237490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03546 4 263 C2H2 Transcription Factor Family AT1G68360 43.066 2.29e-51 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03546 3 48236342 48237490 Vimu3g03546 3 48236342 48237490 ECH