Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03535 ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCCGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGTTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTTATTAAGACAGATTGTCAGCGAGTGCCCGGGAACCCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGGCATAATGGAAATGCTGCTGCTATTTTTACTAGGGAGAATTTGTTAAATCACGTGTTGAGTGCTCTTCCTCGTGGGCTTGGGCGAGATGAGTGGTTGCATGCTTTACCAAGGGCATTGGTTGCGGGTTTCGTTAAGACCGACAAGGAGTTTCAGAGCCGAGGAGAAACTTCTGGAACCACGGCCACGTTTGTAATAGTGGATAGGTGGACTGTTACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATGCCCAGGGTGGTGCTATTTCCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATAGTTGGTGGTGCAGAGATTGGTCCTCTTCGATGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATTGGAGACATGGATGTTGGAGAGTTCATTGTTCCCATACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCCTCTGATGGCATATGGGATGCTCTATCCTCAGAAATGGCTGCAAAATCTTGTCGAGGTTTGCCTGCGGAACTTGCAGCTATGCAGGTTGTCAAGCATAGTGTTACAGAGTTGGCATTTCTTCTCACTTGTATATACATTTCAACTGCTATTCAGGAAGCACTAAGAACGAGAGGATTAAAGGATGATACAACTTGCATAGTAGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCAAAAGCGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGATCCCGTGATTCTGCAAGTAAGCTATCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCGGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACACGGGGCAATCAACATCTGGTATTTTTGTTTGTGCTGTTTGTCAAGTTGATCTTGCTCCAAGTGAGGGCATTTCTGTCCACGCCGGTTCAATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCTTTTCTTTGTTCTGATTGCCGTGATAAGAAGGATGCCATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTCTCATAG 1356 0.4572 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRFGHAAQSKKGEDYFLIKTDCQRVPGNPSSSFSVFAIFDGHNGNAAAIFTRENLLNHVLSALPRGLGRDEWLHALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDAQGGAISSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKHSVTELAFLLTCIYISTAIQEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPQKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNTGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03535 451 CDD PP2Cc 36 317 IPR001932 -
Vimu3g03535 451 SUPERFAMILY PP2C-like 40 317 IPR036457 -
Vimu3g03535 451 FunFam probable protein phosphatase 2C 5 35 295 - -
Vimu3g03535 451 Gene3D - 35 321 IPR036457 -
Vimu3g03535 451 SMART PP2C_4 27 315 IPR001932 -
Vimu3g03535 451 ProSiteProfiles PPM-type phosphatase domain profile. 28 317 IPR001932 -
Vimu3g03535 451 PANTHER PROTEIN PHOSPHATASE 36 316 IPR015655 GO:0004722|GO:0006470
Vimu3g03535 451 SMART PP2C_SIG_2 51 317 IPR001932 -
Vimu3g03535 451 Pfam Protein phosphatase 2C 61 265 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03535 Vimu-Chr3 48159492 48162483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03535 1 450 PP2C-type Phosphatase Gene Family AT1G68410 75.877 0.0 691
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03535 3 48159492 48162483 Vimu3g03535 3 48159492 48162483 ECH