Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03512 TCCCCTATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTCTGCACTCAGTTTTCTACCAAGATAAACAAGATGATGGCATAATTGACCTGGGTCTCAGTCTCGGAACTGTTCAGCACGAAGCTTACCATTCTTCCAGCAACTTGTATGATGATGACCTTATGAACTGGCCTCAGTCTAATCTGAACCTGAAGAACTCAAGCACAATGCATGGTAGATCTGTGAACGAAAATTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTGAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTGCTTGATCACGGTGGATACTCAAGCCTAGCACTTCAATTAGAAGACATGTTTGGAAACCAATCTGTTTCTGGATTAAGATTGTTCCAATCCAGATCAGACTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGACCTGTCGGTGATGTACCTTGGAAGTAG 501 0.4212 SPMDSNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSSNLYDDDLMNWPQSNLNLKNSSTMHGRSVNENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGNQSVSGLRLFQSRSDYSLFYKDRQDNWRPVGDVPWK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03512 166 Pfam AUX/IAA family 65 166 IPR033389 -
Vimu3g03512 166 Gene3D - 88 166 - -
Vimu3g03512 166 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 165 IPR003311 GO:0005634|GO:0006355
Vimu3g03512 166 ProSiteProfiles PB1 domain profile. 94 166 IPR000270 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03512 84 165 B3 DNA Binding Superfamily AT1G34310 34.146 2.29e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vimu3g03512 AUX_IAA 7.3e-15 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03512 3 48002217 48003176 Vimu3g03512 3 48002217 48003176 ECH