Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03510 ATGCGTGGCGGCCGCGGTGAAGTGGAAGTGAAAAGGGTGTTTATTGGAGCGGGATGCAACAGAATAGTGAACAATGTTTCATGGGGTGCTTCCGGTTTCGTCTCTTTTGGAGCTCACAACGCCGTTGCTATTTTCTGCCCCAAGAGTGCTCAAATTGTGACTACTCTTCCGGGTCACAAGGCAGTTGTGAATTGCACCCACTGGCTCCCAACTTCCAAGTTTCTATTTAAAGCAAAACAATTGGAGAAGCATTATTTGCTTTCTGGGGATGCAGATGGTGCTATTATTTTGTGGGAACTGTCCCTTGCTGATGGCAAGTGGAGGCAAGTGCTACAACTGCCACAATTGCACAAGAAAGGTGTTACATGCATTAGTGGAATGATGGTTTCTCAAACCGAGGCAATGTTTGCATCTACTTCTTCAGATTGCACCGTTTGTGTATGGGAACTTGTATTTCCAGTGACTGGCAGCGGTGACTGTAAGTTGTCGTGCCTGGACTCTTTCTCGATTGGATCTAAATCTATGGTAGCCCTATCATTAGCTGAATTGCCTGGAGATTCTCGGAATATTGTCCTTGCAATGGGAGGATTGGATAACAAAGTTCATCTTTATTGTGGTGGAAGGACAGGAAAGCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCGTTGCCTATAAATGTGAATGGGGAAGCAAACAATATTTTTCTGGTTAGTTCATCTCAGGATAAAGGCATACGAATTTGGAAGATGGCATTACGCAGCTCTATGTTGAATGGAAATGACATATACAAGAAAGGAGAAATAAGCTTATCATCCTATATAGAAGGTCCTGTACTCTTGGCTGGTTCATCTTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACATGAGGATTGGGTATATTCAGTAACATGGCAACCCCCTTTGGCTTCATCCCTAGAAGGGGGTACCTATTATCAACCACAAAGTATCTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCTGGTGTCTGGATGAATGTTGTCACTGTTGGGGAACTAAGCCACTGTGCTCTGGGTTTCTATGGTGGCCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCTTTCCATCTTTGGAAAAATGTTGGTAATGATAATTGGCTGCCACAAAAGGTTCCCTCAGGTCATTTTGCACCAGTTACTGATATTTCTTGGGCTAGATCCGGTGATTATATTATATCTGCCAGTCACGACCAGACAACTAGAATTTTTGCTCCATGGAAAGTTGAGGCTTCTCTCCAACATGGAGAATTTTGGCATGAAATATCTCGTCCTCAAGTTCATGGTCATGATATAAATTGTATGGCAGTTATTCATGGGAAGGGGAATCATCGTTTTGTCAGTGGAGCTGATGAAAAAGTTGCCAGAGTATTTGAAGCCCCGTTATCATTTCTTAAGACATTAAATAATGCCACTCTGCAGAAGTCTTGTTCCACTGATGATATCTTAGGAAATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAGAAACCTATTTATGTTCAAGCTGTGCATGAGATTCCCGAGAGAAGAGGCATCGATGGTATTGACACCCTTGAAACTATTCCGGACGCTGTTCCAACTGTTTTCACCGAACCTCCAATTGAAGATCAATTGGCTTGGCATACACTTTGGCCTGAATCACATAAACTCTATGGGCATGGAAATGAACTATTTTCTTTATGCTGCGATCATAGGGGTGAGCTAGTTGCTTCTTCATGTAAGGCCCAGTCTGCCGCCGTTGCAGAGGTATGGCTTTGGCAGGTTGGTTCATGGAAAGCAGTTGGCCGTTTGCAATCCCACAGCTTGACGGTGACACAGATGGAATTCTCATATGACGACAACTTTCTTTTAACTGTCTCAAGGGATCGCCAGTTCTCGGTTTTTTCAATCACAAGAACAGGGTCCGGTGAAATTAGTTATAGTCTTCTTGGGAGGCAGGAAGGGCACAAGCGGATTATCTGGTCATGTTCATGGAATCCTCACGGTCATGAATTTGCTACAGGCTCACGTGATAAGACGGTTAAAATCTGGGCCGTTGAAAAGGATTCGTCCATCCGGCAGCTTATGACTTTGCCTCAATTTATGAGTAGTGTGACAGCGTTATCTTGGGTTGGTCTCCATCATCAGAGGGATCACGGACTTCTAGCTGTTGGAATGGAAAATGGGCAAATAGAATTGTGGAATCTGTCTTATAACAGAGCAGATGATGGTTGCATAGCAGCACCAGGTTTGGTTGCTGCTCTTGTTGTACGTATAGATCCTTTTATATGTCATGCCTCTGCTGTAAACTGCTTAGCATGGAAGAAAAATCAGGAAGATCACACGAGTCTGCAACTTGCTTCTTGCGGAGCTGATAATTGTGTAAGAGTGTTTGATGTAACGGTTTAG 2511 0.4329 MRGGRGEVEVKRVFIGAGCNRIVNNVSWGASGFVSFGAHNAVAIFCPKSAQIVTTLPGHKAVVNCTHWLPTSKFLFKAKQLEKHYLLSGDADGAIILWELSLADGKWRQVLQLPQLHKKGVTCISGMMVSQTEAMFASTSSDCTVCVWELVFPVTGSGDCKLSCLDSFSIGSKSMVALSLAELPGDSRNIVLAMGGLDNKVHLYCGGRTGKLVHACELKGHTDWIRSLDFSLPINVNGEANNIFLVSSSQDKGIRIWKMALRSSMLNGNDIYKKGEISLSSYIEGPVLLAGSSSFQISLESLLIGHEDWVYSVTWQPPLASSLEGGTYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGNDNWLPQKVPSGHFAPVTDISWARSGDYIISASHDQTTRIFAPWKVEASLQHGEFWHEISRPQVHGHDINCMAVIHGKGNHRFVSGADEKVARVFEAPLSFLKTLNNATLQKSCSTDDILGNVQILGANMSALGLSQKPIYVQAVHEIPERRGIDGIDTLETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHRGELVASSCKAQSAAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSYDDNFLLTVSRDRQFSVFSITRTGSGEISYSLLGRQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKDSSIRQLMTLPQFMSSVTALSWVGLHHQRDHGLLAVGMENGQIELWNLSYNRADDGCIAAPGLVAALVVRIDPFICHASAVNCLAWKKNQEDHTSLQLASCGADNCVRVFDVTV 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03510 836 Gene3D - 580 679 IPR015943 GO:0005515
Vimu3g03510 836 SMART WD40_4 49 99 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 680 719 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 725 769 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 402 441 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 296 347 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 584 628 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 106 149 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 451 495 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 357 396 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 631 670 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 789 833 IPR001680 GO:0005515
Vimu3g03510 836 SMART WD40_4 209 258 IPR001680 GO:0005515
Vimu3g03510 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 440 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 405 440 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 688 718 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 51 98 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 303 346 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 117 148 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 217 258 IPR001680 GO:0005515
Vimu3g03510 836 Pfam WD domain, G-beta repeat 796 833 IPR001680 GO:0005515
Vimu3g03510 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 728 IPR001680 GO:0005515
Vimu3g03510 836 SUPERFAMILY WD40 repeat-like 191 771 IPR036322 GO:0005515
Vimu3g03510 836 Gene3D - 154 270 IPR015943 GO:0005515
Vimu3g03510 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 721 - -
Vimu3g03510 836 PANTHER ELONGATOR COMPLEX PROTEIN 2 11 835 IPR037289 GO:0002098|GO:0033588
Vimu3g03510 836 FunFam Elongator acetyltransferase complex subunit 2 366 677 - -
Vimu3g03510 836 SUPERFAMILY WD40 repeat-like 19 317 IPR036322 GO:0005515
Vimu3g03510 836 Gene3D - 2 152 IPR015943 GO:0005515
Vimu3g03510 836 PRINTS G protein beta WD-40 repeat signature 706 720 IPR020472 -
Vimu3g03510 836 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Vimu3g03510 836 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Vimu3g03510 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 267 IPR001680 GO:0005515
Vimu3g03510 836 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 752 834 IPR011044 -
Vimu3g03510 836 Gene3D - 405 515 IPR015943 GO:0005515
Vimu3g03510 836 Gene3D - 288 404 IPR015943 GO:0005515
Vimu3g03510 836 Gene3D - 680 836 IPR015943 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03510 3 47984785 47990584 Vimu3g03510 3 47984785 47990584 ECH