Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03509 ATGGAGGCGCAACCGCCAACACCCTCGACTGCGCCGCCACCTCCGCCGCCACACCTCAGCTACCCTGACTCGGTCGAATCCTCGCCACGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTTGCGCCGGCGTCGTCCAAGCTACGTCTGATGTGCAGCTACGGTGGACATATCGTTCCGCGTCCACACGATAAGTCCCTCTGTTACGTTGGTGGCGACACGCGCATCATCGTTGCGGAACGCGCTACGTCACTCGCGGACCTCTCCACGCGCCTCTCAAAGACTTTCCTGAACGGACGGACCTTTACGCTGAAGTACCAACTTCCCAACGAGGACCTCGATTCTCTCATCTCCGTCACCACCGACGAAGACCTGGAGAACATGATCGATGAGTATGACCGCACCGCCGCCGCGGCCACCTCCGTCGTCAAACCTTCCCGCATCCGCCTCTTTCTCTTCCCCACCAAACCCGATTCCACTCACTCCATTCCCCCCCAAATTCTCGACACCTCGACCAAATCGGACGACTGGTTCTTGAATGCCCTAAACGGCAACGGAGTACCTAACCGAGGGTTTTCCGACTCTGCTTCTGTTAATTGCCTCGTCGATCTCGACGACGAGGTTGCCGGGAACAACCTCGAACCCGGTTCCAAGGACGTTGGGGAAGGTGGTGCTGGTGCTGGTGTTGGTGGAGGCGCTTCTTTGGGTGGATCTTTCGGCAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCATCGTTCGGGTCCACGTCGTCGTCGCCGTCGCTCGCCAATTTGCCGCCGATTAGGGTTCATGTCGTGGAGGATCAGAAGGTAATGGGGATTGAGGAGCAGTTCGCGCAGATGGGGGTTGGAGTGGGACAGAAGCAGCAGGATGAGGGTTTTGTTTTGCTGTCTTCGCCGCCGCCTCCGCCAGTCCCGGCCACGCTCGCCGCCGTGGGTGTACCGATTGGCCCACCGACGATTGTCGCTGGGGATTATCACAACCGGGTTGTCTCTGATGATGAGAGATCCGATCATGGGGTTCCGGTCGGGTATAGAAAGCCTCCCACTCCTCAGCCACAAGTACAGACGCAAGCGCAGTCACAAACACAAACCCTTGCTCCTCAGTTTCAACAGAAGTCAACTGGTGGTAGCGGCGGTGTTGTTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTTGCGAACGCAATTTCGCGTCAGAAACCGGCTGTTTATCAAGAACAAGTTCATATTCAATCTGGGACTACAAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTCAATGTTTCTGATCCGCACGGTCGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTACAACAGCAATTTGAACAGCATCAGCAGACGCAGCAGTTGCCACAACAGCAATTCGAGCAGCACCAGCAAGCGCTGCCACAACAGCAGCAACAATTTATTCATGGCACACATTTCATTCACCATAACCCTGCAATTTCTGCGTATTATCCTGTATATCCTTCCCAGCAACATCCACAGCATCCACAACATCCACAGCAGCCACAGCTTTACTATGTTCATGCGAGGCAACCGCAGGCCTACAACCTACCTGTGCAGCAGGCTAATATGGGTGACTCTGCTGGAAATCTTGCTTCTAGCCGCCCACAAACTCCACCAAATCCTGCTACACTAGTTCCACAATCTGCTGCATACAATCCCATGAGAAATACTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCCGCAACCGCAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAACAGTATGTCACTTATTCACAGATTCATCATCCATCTCAGTCCATGGCTCCTAATTCTGCTCCCCAGGCGAATTATGGTTTTGATTATGCTGACCCTGCTCATGCTCAAATATACTACTCTCAACCCTTGGCACCTACAATGCCTTCCCAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATTCCTCGGACAATTTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2115 0.5348 MEAQPPTPSTAPPPPPPHLSYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRTFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSVVKPSRIRLFLFPTKPDSTHSIPPQILDTSTKSDDWFLNALNGNGVPNRGFSDSASVNCLVDLDDEVAGNNLEPGSKDVGEGGAGAGVGGGASLGGSFGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGVGQKQQDEGFVLLSSPPPPPVPATLAAVGVPIGPPTIVAGDYHNRVVSDDERSDHGVPVGYRKPPTPQPQVQTQAQSQTQTLAPQFQQKSTGGSGGVVDLPSPDSVSSDSSLANAISRQKPAVYQEQVHIQSGTTRVPSNPVDPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQTQQLPQQQFEQHQQALPQQQQQFIHGTHFIHHNPAISAYYPVYPSQQHPQHPQHPQQPQLYYVHARQPQAYNLPVQQANMGDSAGNLASSRPQTPPNPATLVPQSAAYNPMRNTPMPKTEMNAYRAATAGTPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAPQANYGFDYADPAHAQIYYSQPLAPTMPSQYQTMTAAAVMMQEGSAQHSSDNLKQQIRTSQPL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03509 704 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g03509 704 SUPERFAMILY CAD & PB1 domains 63 163 - -
Vimu3g03509 704 Pfam PB1 domain 63 154 IPR000270 GO:0005515
Vimu3g03509 704 MobiDBLite consensus disorder prediction 243 273 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 559 585 - -
Vimu3g03509 704 CDD PB1_UP2 51 153 - -
Vimu3g03509 704 PANTHER OS05G0427100 PROTEIN-RELATED 20 516 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 472 491 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 366 442 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 252 273 - -
Vimu3g03509 704 Gene3D - 67 153 - -
Vimu3g03509 704 ProSiteProfiles PB1 domain profile. 47 155 IPR000270 GO:0005515
Vimu3g03509 704 SMART PB1_new 62 155 IPR000270 GO:0005515
Vimu3g03509 704 MobiDBLite consensus disorder prediction 683 704 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 348 447 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 24 40 - -
Vimu3g03509 704 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03509 Vimu-Chr3 47979582 47981912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03509 44 262 MAP Kinase Kinase Kinase AT1G79570 32.456 1.49e-23 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03509 3 47979582 47981912 Vimu3g03509 3 47979582 47981912 ECH
Vimu3g03509 3 47979582 47981912 Vimu8g01582 8 21723889 21726090 ECH