Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03508 ATGTGCAGTGCCAATAATTTCTTGCTCAACTTTACTCCCAATTTAGATAGATGTTTAATTTCTCGGTTGTTCATTGGGTGGGGGCAGGGAGGGATGAGGCTGCCGGTTGATCCCTCGGCTCATACTATCAAGTCCCATGGAGCCGCACTTGCAAGAAATCACGTTCGTGATTGGCTTATTTTGTTGCTTCTTATAGTGATAGAGGTTGTCCTTTTTGTCATCAAACCATTTTATCGCTTTGTGGGAAGGGATATGATGGAAGACCTTAAATATCCTATGAAAGAAAACACGGTGCCAGTTTGGGCTGTTCCTTTATATGCGGTTCTGTTGCCAATGGCTGTTTTCCTTCTATTTTATATGCGCAGGAGAGATGTATACGATTTACACCACAGTGTTTTAGGCTTGTTATTTGCAGTTCTGATAACTGGGGTCTTAACCGATGCTATAAAAAATGCAGTTGGCCGGCCTCGGCCAGACTTCTTTTGGCGTTGCTTCCCCGATGGAGTGGAGAATTATGATAAATGGGGAGATGTGGTATGTCATGGCAACGAGAGCGATATAAAAGAAGGACACAAAAGTTTCCCAAGCGGCCATACATCATGGTCCTTTGCAGGTCTAGGTTTTCTCTCTCTGTACTTATCGGGAAAGATTAAAGCTTTTGATCAAAAAGGGCACATAGCAAAATTATGCATTGTTTTTCTTCCTCTTCTTACTGCTTGCATGGTTGGAATCTCACGAGTGGATGACTATTGGCATCATTGGCAAGATGTGTTTGCAGGAGGACTTCTTGGGTTAGTCGTGGCAACCTTTTGCTATATGCAGTTCTTCCCTGCCCCCTATAGTAATGAAGGATGGGGTCCATATGCATATTTCCGAGCAATGGAGGAATCACGAGGCAACAATGGAAACAGGGATAGGGAGTCGCCCGTTGTGCAGGCGATGGAGGAAGGTGTTACGAATCAAGAACCAAGGAGAAATGGTGACACCTTTACGCCTTACCCTTTTCGTAGCCCAACCTTGGAAGCCATGGAAATGGAAAACAAGTAA 1047 0.4432 MCSANNFLLNFTPNLDRCLISRLFIGWGQGGMRLPVDPSAHTIKSHGAALARNHVRDWLILLLLIVIEVVLFVIKPFYRFVGRDMMEDLKYPMKENTVPVWAVPLYAVLLPMAVFLLFYMRRRDVYDLHHSVLGLLFAVLITGVLTDAIKNAVGRPRPDFFWRCFPDGVENYDKWGDVVCHGNESDIKEGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDQKGHIAKLCIVFLPLLTACMVGISRVDDYWHHWQDVFAGGLLGLVVATFCYMQFFPAPYSNEGWGPYAYFRAMEESRGNNGNRDRESPVVQAMEEGVTNQEPRRNGDTFTPYPFRSPTLEAMEMENK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03508 348 Pfam PAP2 superfamily 132 276 IPR000326 -
Vimu3g03508 348 SMART acid_phosph_2 132 272 IPR000326 -
Vimu3g03508 348 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 52 284 - -
Vimu3g03508 348 FunFam Lipid phosphate phosphatase 2 52 283 - -
Vimu3g03508 348 CDD PAP2_containing_1_like 89 275 - -
Vimu3g03508 348 PANTHER LIPID PHOSPHATE PHOSPHATASE 43 314 IPR043216 GO:0006644
Vimu3g03508 348 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 54 281 IPR036938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03508 Vimu-Chr3 47961948 47968071 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03508 40 331 Lipid Metabolism Gene Families AT3G02600 66.118 1.42e-153 432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03508 3 47961948 47968071 Vimu3g03508 3 47961948 47968071 ECH