Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03507 ATGTGGCCTTGCAGACAATCCTCCTTCGTTCCAATCTACATTTTTGCCTTCTTTCTTTCTTTCTCCTTCGACTGCCTCGAATCTGGTGCACGTGCAGTTGCAGAGCGTGTAGCCTTTATTGATAGTGATTTTACTATAGAAGGGAATGTGATAGCGCAGAGATCTGATCCCACCAACGCTACAAGCATTCGAAAAATAATGCCAGAAATTCAGTTGGGTATGCATACAATCAGATCACATGGAACTAGAGTGGCAAGGATACATATGCATGACTGGTTGATTCTTTTGCTTCTTGTGATCATCGATGCTGTCTTGAATATAATTGAGCCATTTCATCGTTTTGTTGGGGAGGGGATGATGACTGACCTTAGATACCCATTGAAAGGCAATACTATTCCCTTTTGGGCCGTTCCGATAGTAGCCATATTGTTACCACTGGCCGTTTTTCTCGTTTATTATTTCATTCGAAAGGATGTCTATGACTTCCACCACGCTATATTGGGCCTTTTATTTTCTGTACTCATTACTGCGGTGATAACTGATGCTATCAAGGATGGTGTAGGACGGCCGAGGCCAGATTTCTTCTGGCGTTGTTTCCCTGATGGAAAAGGGGTATTTGATCCAGTAACAAGTGATGTTCGCTGTACTGGAGATAAGGGTGTTATTAAGGAAGGGCACAAAAGTTTCCCCAGCGGACATACTTCTTGGTCCTTTGCTGGTCTTGTTTATCTTTCTTGGTATCTATCTGGTAAAATTAGGGTATTTGACCGAAGGGGCCATGTTGCAAAGCTCTGTCTCGTTTTCTTACCGGTCCTCGTGGCAGCTATGATTGCTGTCTCTCGTGTTGATGATTATTGGCATCATTGGCAAGATGTGTTTGCTGGAGGTCTTATAGGGACGACAATTGCTTCCTTTTGTTACTTACAATTCTATCCACCTCCTTACGACCTAGATGGTTGGGGACCTCACGCATACTTCCAGATGTTGGCTGAATCTCGTAATGGTTCTCAGCCCTCTACCGTGAATAATGAGATTCATCATGTGCAATCTTCTGAGCTTCAAGCTGTATCTGTGTACATTCCACCTCAACATGACGCTGATACACGAGGCAACAGCTGGGATTCAAGCCCCATGTTAGGAGCATCCCAAAATGTAAGAACACATTGA 1167 0.4379 MWPCRQSSFVPIYIFAFFLSFSFDCLESGARAVAERVAFIDSDFTIEGNVIAQRSDPTNATSIRKIMPEIQLGMHTIRSHGTRVARIHMHDWLILLLLVIIDAVLNIIEPFHRFVGEGMMTDLRYPLKGNTIPFWAVPIVAILLPLAVFLVYYFIRKDVYDFHHAILGLLFSVLITAVITDAIKDGVGRPRPDFFWRCFPDGKGVFDPVTSDVRCTGDKGVIKEGHKSFPSGHTSWSFAGLVYLSWYLSGKIRVFDRRGHVAKLCLVFLPVLVAAMIAVSRVDDYWHHWQDVFAGGLIGTTIASFCYLQFYPPPYDLDGWGPHAYFQMLAESRNGSQPSTVNNEIHHVQSSELQAVSVYIPPQHDADTRGNSWDSSPMLGASQNVRTH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03507 388 SMART acid_phosph_2 164 307 IPR000326 -
Vimu3g03507 388 MobiDBLite consensus disorder prediction 366 388 - -
Vimu3g03507 388 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 87 315 IPR036938 -
Vimu3g03507 388 CDD PAP2_containing_1_like 121 310 - -
Vimu3g03507 388 PANTHER LIPID PHOSPHATE PHOSPHATASE 78 352 IPR043216 GO:0006644
Vimu3g03507 388 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 86 316 - -
Vimu3g03507 388 MobiDBLite consensus disorder prediction 368 388 - -
Vimu3g03507 388 FunFam Lipid phosphate phosphatase 2 86 318 - -
Vimu3g03507 388 Pfam PAP2 superfamily 166 310 IPR000326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03507 Vimu-Chr3 47952031 47961710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03507 67 356 Lipid Metabolism Gene Families AT1G15080 76.207 2.04e-159 447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03507 3 47952031 47961710 Vimu3g03507 3 47952031 47961710 ECH