Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03504 ATGGCCTCTGAAAAAGTAATCCCTTCTGATGTGGTCGAAAGTGGACACGCTCCACTTGATTCTGGCCATGCTCGTCTCAGAGAACTCGGTTACAAACAAGAACTCAAGCGTGATCTTTCGGTGATTTCGAATTTTGCCTTTTCATTTTCTATTATTTCGGTGCTCACCGGAGTTACTACTCTTTACAACACTGGATTGAAGTATGGTGGCCCTGTTTCCTTAGTCTATGGTTGGTTCATTGCCTCTGCTTTCACCATGATTGTGGCGCTTCCAATGGCCGAGATTTGCTCGTCCTATCCCACCTCCGGTGGGCTTTACTATTGGAGCGCCAAGCTTGCTGGACCCAGATGGGCTCCCTTCGCTTCATGGATCACCGGCTGGTTCAATATTGTGGGCCAGTGGGCAGTGACAACAAGCGTAGATTTTTCACTTGCACAACTGATTCAGGTCATTATTCTGCTCAGTACTGGTGGGAAAAATGGCGGTGGATATGAGGCATCTAAATATGTAGTTATTGCTCTCCATGGGGGAATCTTGCTCGTACACGGTATAATAAACAGCCTTCCGATCTCATTGTTGTCATTCTTGGGACAACTGGCAGCTATTTGGAATGTTTTAGGTGTTTTTGTACTTACGATTGTGATTCCATCCGTTGCAACGGAAAGAGCAAGTGCCAAGTTTGTTTTCACTTATTTCAATACTGAAAATGGAGAGGGAATCAGCAGCAAACCTTACATATTTCTTTTGGGGCTTCTAATGAGTCAGTATACCTTGACTGGGTTTGATGCATCAGCTCATATGACAGAGGAAACCAAGGATGCTGATAGAAATGGACCGAAAGGAATTATCAGCGCCGTTGGGATATCCATTATTGTTGGATGGTTTTACATTCTAGGCATTACCTTTGCAGTCACTGACATCCTTAGCCTTTTGAGTGAAGATAATGATGCTGGTGGGTATGCCATTGCTGAAGTATTTTATCAAGCATTCAAGAAAAGATATGGCAATGGAAGTGGGGGTATTGTTTGCTTAGTAATCGTTGGTGTTGCGATTTTTTTCTGTGGCATGAGTTCAGTTACCAGCAACTCAAGAATGGCTTATGCTTTCTCTAGAGATGGTGCCATGCCCTTGTCATCATTGTGGCATCAGGTTAACAAGCAGGAGGTCCCCATCTATGCAGTTTGGCTTTCCGTTTCAGTATCATTTTGCATGGCATTAACGTCTCTTGGAAGCATAGTGGCTTTTCAGGCCATGGTGTCCATAGCAACCATTGGTCTCTATATTGCCTATGCCTTTCCCATATTCTTTAGGGTGACATTGGCACGAAAGCATTTCGTTCCTGGGCCTTTCAACTTGGGCCGTTACGGAGTTATCGTGGGCTGGGTTGCCGTTCTTTGGGTGCTGACCATTTCCATACTCTTCTCATTGCCTGTTTCCTACCCAATAACCGCAAAGAAGCTTAACTACACCCCTGTTGCTGTTGCATGTTTGCTTATTTTTGTAGTTTCTTACTGGATTATCAGTGCTCGCCGTTGGTTTAAAGGCCCAATTACTAATATATAA 1563 0.4421 MASEKVIPSDVVESGHAPLDSGHARLRELGYKQELKRDLSVISNFAFSFSIISVLTGVTTLYNTGLKYGGPVSLVYGWFIASAFTMIVALPMAEICSSYPTSGGLYYWSAKLAGPRWAPFASWITGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNGGGYEASKYVVIALHGGILLVHGIINSLPISLLSFLGQLAAIWNVLGVFVLTIVIPSVATERASAKFVFTYFNTENGEGISSKPYIFLLGLLMSQYTLTGFDASAHMTEETKDADRNGPKGIISAVGISIIVGWFYILGITFAVTDILSLLSEDNDAGGYAIAEVFYQAFKKRYGNGSGGIVCLVIVGVAIFFCGMSSVTSNSRMAYAFSRDGAMPLSSLWHQVNKQEVPIYAVWLSVSVSFCMALTSLGSIVAFQAMVSIATIGLYIAYAFPIFFRVTLARKHFVPGPFNLGRYGVIVGWVAVLWVLTISILFSLPVSYPITAKKLNYTPVAVACLLIFVVSYWIISARRWFKGPITNI 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03504 520 PIRSF AA_transporter 26 519 - -
Vimu3g03504 520 Pfam Amino acid permease 39 495 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vimu3g03504 520 PANTHER AMINO-ACID PERMEASE BAT1 20 520 - -
Vimu3g03504 520 Gene3D Amino acid/polyamine transporter I 33 514 - -
Vimu3g03504 520 FunFam Amino-acid permease BAT1 33 512 - -
Vimu3g03504 520 ProSitePatterns Amino acid permeases signature. 69 100 IPR004840 GO:0006865|GO:0016020|GO:0055085
Vimu3g03504 520 NCBIfam amino acid permease 26 516 IPR004756 GO:0006865|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03504 Vimu-Chr3 47907311 47912680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03504 86 520 Organic Solute Cotransporters AT2G01170 77.701 0.0 661
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03504 3 47907311 47912680 Vimu3g03504 3 47907311 47912680 ECH