Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03500 ATGGAGAAGGTTTGTGAGTTCTGCACGGCCCTGAGGCCACTTGTTTACTGTAAAGCTGATTCGGCATATCTTTGTCTATCCTGTGATGCGAAGGTGCATTTGGCAAATGCTTTGTCCGGCCGGCACCTCCGGAACCTTGTGTGTAACTCATGTGGACATCATGTTGCTTATGTTGTATGTTTGAACCACAAAATGTTAATCTGTCGAGACTGTGATAAAAAATTGCACAATGTTTCTTTATCACACCAGAAACGAGCTATCAGAAGTTTCATAGGTTGCCCTTCTGCTAAAGACTTTGCAGCACTCTGGGGGTTTGAATTGAATGACATTGAAAACTGTGCCAGTCAGGATCAGTATGATTCAGTTTCTTGTGTTTCTGCGGAATTGAATGTAGCACAAGTCTCAGGAAAGCCGGACATTCAAACTGGGGTCCCTTCACTGCTAGCTGGGGCCAAACTTGATGAGGGATCGACCAGTCAACAAGGTCAGGGATTAGAGGGAGTGGATTTGCAGGTTAGGAGGGAGAATGAATTCTTGCACAGTTGTCCTGGTGGTTTTGTGAGGCTGTCGTTGGTGGTTTTGTGGAATTTGCAGACATGTTTTGGCCAGATTGGTGTTCCTCACCTTGTAAAATCTCTTGTAGTTGCTAATCTTCCTTTCTCATTTTATGACAACCACTTGATATTGCACAATCATCAAGAGCGTCAAACTATTGTGCAGCAGATTATTGATCTAAAATGGCTCCAACAAAATGAGGAGATCGATTATTCTGCGAAGATCAGTAGGCTAAAAGAAAAAAAATCATCACCTTCATTATATAACACTCTTAAGAAATTGGACGAAAAAATCAATGGTCAGGCACAAAATTCCCAGGATTTTGCTACTAATGTTCTGGAAAAAGACTGTCCTATCGTGGAGCCGAGCACAGAAACTTTGCCTTCTACTTTTTCTCAACTTGATAATTTATCTTCATCTTCAATTATCGATCTTCCCTTGCATGGAGAATTGTTCTGGACGTGCAAAAGTCCACTTCGAAGTAATCAGCTGTGGTCCCAAAATATTCAAGACCTCGGTATATGTGAAGAACTTGTTCGTCTAGATGATTTTAACATCCCTGATGTTGACTTAACTTTCCAGAACTTTGATGAATTATTTGGAGGAGATCAGGATCCAATTAGAATATTGTTTGATGATCAAGATGTCTCTTGCTCTTCTTTAGAGAAGGATAAGTCAGTCGACAAGTCAGATATTGACAATCTAAGTGCAATGGAGGACTCTTCGGCTTCTGCATCCATTAATCTCTTCCAATCTGATAATGAGAACAAGGATATGAACCCTCTCGGCCAGTACTGTCCAAAAAGCATTGATCCTACTCATGCAACTCAACCATTTGATTCAACTATACCCTTATCTGTTTTGGGAATCAGTCTGGAAAGCAGTTTCACACATGAGGACGGTATCCTTTCTCCCTACAGTGAAGGGAAGGCTTATTCAGTTATCGCATACCTGTTAGTTCTTTATCTCAGTATTGTGAATTTTGACATTCCAATTTGTTTTTGGCATGAGAAGCAATTTCGACTTCTATCCAGGAAACCTGGAGCTAATGTAAGAAAGAGAGTGAAAGGCATTGCTATGACAGAAAGTTTTGACTTTTGCATATTCATGCCGTAG 1671 0.4075 MEKVCEFCTALRPLVYCKADSAYLCLSCDAKVHLANALSGRHLRNLVCNSCGHHVAYVVCLNHKMLICRDCDKKLHNVSLSHQKRAIRSFIGCPSAKDFAALWGFELNDIENCASQDQYDSVSCVSAELNVAQVSGKPDIQTGVPSLLAGAKLDEGSTSQQGQGLEGVDLQVRRENEFLHSCPGGFVRLSLVVLWNLQTCFGQIGVPHLVKSLVVANLPFSFYDNHLILHNHQERQTIVQQIIDLKWLQQNEEIDYSAKISRLKEKKSSPSLYNTLKKLDEKINGQAQNSQDFATNVLEKDCPIVEPSTETLPSTFSQLDNLSSSSIIDLPLHGELFWTCKSPLRSNQLWSQNIQDLGICEELVRLDDFNIPDVDLTFQNFDELFGGDQDPIRILFDDQDVSCSSLEKDKSVDKSDIDNLSAMEDSSASASINLFQSDNENKDMNPLGQYCPKSIDPTHATQPFDSTIPLSVLGISLESSFTHEDGILSPYSEGKAYSVIAYLLVLYLSIVNFDIPICFWHEKQFRLLSRKPGANVRKRVKGIAMTESFDFCIFMP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03500 556 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 437 - -
Vimu3g03500 556 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Vimu3g03500 556 CDD Bbox1_BBX-like 4 44 - -
Vimu3g03500 556 SMART bboxneu5 48 87 IPR000315 GO:0008270
Vimu3g03500 556 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03500 Vimu-Chr3 47876325 47881877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03500 232 392 C2C2-CO-like Transcription Factor Family AT1G68190 35.583 1.06e-19 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03500 3 47876325 47881877 Vimu3g03500 3 47876325 47881877 ECH