Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03499 ATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCCCCGCTGCCGTCTCTGGTCAATTGCCGTCAAACGGAGGCTACGGTTCACTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGAGGCGGCGTTTCGCTGTACCCGTACTCCGACTCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCAGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAGTCAGTACGCCGCCGCCGGCAGTGGCTCCTCCGGCCAGACTCAACCGACGCTGTTCGACGTCTTGCATGGCTTCCGTAGCCTCCACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTTTGAGTAATAATAATAACAAGGACCTGCAGGAAGCGTCGGACGAGAGTCCAACGAGCGTGATGGAGAATAACGTGGTGGAGGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGTCTCCTGCTGTTGCCACCAATAATAATACAACTCGCAATAAAGGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTTTTTTTGTTATTATTATTATTATTATTATTATTATTATTATTTGTCTTGATATCATAACCTGGGCTTTAGGGTCGTTAGGTGGGGCTCTAGCTTTTCCGTCGTTTCCTTTTCTTGCGTGGCAGAAGGTGTATGTTCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTATAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACTGGAACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCGGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGTTGTCGTATCACAGCCTAAGCCGAGAACAATGAAGCTGGAAAGATAA 1215 0.5086 MLNKDACSPSSNGGFGPAAVSGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSDSTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQYAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNILSNNNNKDLQEASDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQSPAVATNNNTTRNKGATRPRATATPPEAVFFVIIIIIIIIIIICLDIITWALGSLGGALAFPSFPFLAWQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKVVVSQPKPRTMKLER 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03499 404 FunFam zinc finger CCCH domain-containing protein 15-like 313 352 - -
Vimu3g03499 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 345 IPR000571 GO:0046872
Vimu3g03499 404 Gene3D - 353 389 - -
Vimu3g03499 404 Gene3D - 314 352 - -
Vimu3g03499 404 ProSiteProfiles Zinc finger C3H1-type profile. 357 385 IPR000571 GO:0046872
Vimu3g03499 404 SUPERFAMILY CCCH zinc finger 353 388 IPR036855 GO:0046872
Vimu3g03499 404 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Vimu3g03499 404 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 390 IPR045877 GO:0003729
Vimu3g03499 404 SUPERFAMILY CCCH zinc finger 316 351 IPR036855 GO:0046872
Vimu3g03499 404 Coils Coil 89 116 - -
Vimu3g03499 404 FunFam Zinc finger protein 36, C3H1 type-like 1 353 389 - -
Vimu3g03499 404 SMART c3hfinal6 357 384 IPR000571 GO:0046872
Vimu3g03499 404 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Vimu3g03499 404 MobiDBLite consensus disorder prediction 167 193 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03499 60 399 C3H Transcription Factor Family AT1G68200 44.898 1.01e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g03499 zf-CCCH 3.4e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03499 3 47871024 47873404 Vimu3g03499 3 47871024 47873404 ECH