Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03494 ATGTTTTGTTATAACGTCATAGAAAAACCACTAGAGCTCAGAAACCCACCAAAACCAGAGAGACACGATGAATTGAAGGGCAGTGAGCACATCACCGCCCTTACTCTCAGTCTCACTCTCACACTCAAACCCCTTCAACGCCTTCTCTCAATTCACACAACAATTACCCTTTTCAGTTTTCTCCTTTCATTTTCTTCCTCTCTGCTAAACACCGTCATGTCTCAGAACAAGAATGTTTCTTTGGAGCGAAGTGCCCCACAACAACCTCGTCCTTCCAATGTATACGTGGGAGTCGGAGGTTCAGACAGCCTCTGCATAAGCCCCAAGCGAGATCACAAGTCTGAAAACTATGAGGACCTTCAATTAGAGTTCAACCCTCTTGTGTTTAGCTCTTTGGAGCAGTATTTGCCTCCCCACATGCTCAACCTCTCACGCGAGGTTAAGGTTCAGTACATGAGGAACATTTTGCTTCGATATTTGCCCGAGAGTGAGCGCATTCGGATTCAAAAGCACAAGGAATACAGGCAAAAGATCATGTTGAACTATCCACCTCTGCACAGGGAGATATATAGTATGGATGCTGAGAAGTTTTTCACACCATCATTTCTCAGGGCAATTAAAGAAAATACAGAAGAGAGTTTTAGAAGTATAATGGCAGAACCCTGTAAAGGAATTTATACATTTGAAATGCTTCAACCACGATTCTGTGAAATGCTAGTATCTGAGGTGGATCATTTTGAAAGATGGGTTCATGCTACCAAGTTCAGAATCATGCGACCTAATATAATGAATCAATATGGTGCCGTACTTGATGATTTTGGCTTGGAAGCCATGCTTGACAGATTGATGAGTGATTTCATACGTCCTATGTCCCGAGTTTTCTACTCTGAAATTGGTGGATCCTCACTGGACTCTCATCATGGGTTTGTTGTTGAATATGGAATCAATAGGGATGTGGAACTTGGCTTCCATGTGGACGATTCAGAAGTCTCCTTAAATATTTGCTTGGGGGACAAATTTTCTGGTGGAGAACTGTTCTTCCGGGGTGTTCGATGTGATGAACATGTAAATTCAGATATCCAACCAGTGGAGAACTTCGATTACTACCATGTTCCAGGACATGCAATTCTTCATCCAGGTCGTCATCGGCACGGTGCTAGACCTACAACATCTGGGAATCGGATAAACTTAATTCTCTGGTGTAGAAGTTCGGCTTTTAGAGAGTTGAAGAAATATCGGAGAGATTTTTCTAGCTGGTGTGAAGAATGCAAACGAAAGAAGAAGGAGAAAGAGCGCTTGCTAGTTATGGCCACCCAACAGGAATTAATGAAGAGGGAAATGCAATCGGCCTCGTGA 1356 0.4292 MFCYNVIEKPLELRNPPKPERHDELKGSEHITALTLSLTLTLKPLQRLLSIHTTITLFSFLLSFSSSLLNTVMSQNKNVSLERSAPQQPRPSNVYVGVGGSDSLCISPKRDHKSENYEDLQLEFNPLVFSSLEQYLPPHMLNLSREVKVQYMRNILLRYLPESERIRIQKHKEYRQKIMLNYPPLHREIYSMDAEKFFTPSFLRAIKENTEESFRSIMAEPCKGIYTFEMLQPRFCEMLVSEVDHFERWVHATKFRIMRPNIMNQYGAVLDDFGLEAMLDRLMSDFIRPMSRVFYSEIGGSSLDSHHGFVVEYGINRDVELGFHVDDSEVSLNICLGDKFSGGELFFRGVRCDEHVNSDIQPVENFDYYHVPGHAILHPGRHRHGARPTTSGNRINLILWCRSSAFRELKKYRRDFSSWCEECKRKKKEKERLLVMATQQELMKREMQSAS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03494 451 SMART p4hc 223 402 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vimu3g03494 451 Gene3D q2cbj1_9rhob like domain 223 403 - -
Vimu3g03494 451 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 304 403 IPR005123 -
Vimu3g03494 451 Coils Coil 420 440 - -
Vimu3g03494 451 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 93 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03494 Vimu-Chr3 47821888 47826197 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03494 3 47821888 47826197 Vimu3g03494 3 47821888 47826197 ECH