Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03493 ATGGCCATGGCTTCTGCAAAGATCAATACTTTGTCTTCACAGTGGATCGCCCACAGCACCTTTTCTCCACGCCGGGGATCCTCTCATCGCCGGGTCTCTCTTCCGATCCGCGCCTCTTCTTACCAACACGAACTCGTCCAAACCGCCAAATCTATTGCAACTCCTGGGCGTGGAATTCTTGCAATTGATGAATCAAATGCAACATGCGGGAAGCGTTTAGCATCCATTGGTTTGGACAATACTGAGGTGAATCGCCAAGCTTACAGGCAACTTCTGCTTACCACACCTGGCCTTGGAGAGTATATTTCTGGTGCCATTCTTTTTGAAGAAACCCTTTACCAGTCAACCACTGATGGAAAGAAATTTGTGGATTGCCTTCGTGATCAGAACATTGTTCCTGGCATCAAAGTTGATAAGGGTCTGGTCCCCCTGCCGGGTTCAAACAATGAATCATGGTGCCAAGGGTTGGATGGATTGGCTTCTAGGTCTGCTGAATACTACAAGCAAGGTGCTCGATTTGCCAAGTGGAGGACAGTTGTTAGCATTCCATGTGGTCCTTCTGCATTAGCTGTTAAGGAAGCAGCATGGGGACTTGCACGTTATGCCGCTATCTCTCAGGACAATGGCCTTGTGCCAATTGTGGAGCCTGAAATTCTTCTGGACGGAGACCACTCAATTGAAAGGACGTTGGAAGTGGCCGAGAAAGTGTGGTCAGAAGTCTTCTTCTACTTGGCTGAAAACAATGTCATGTTTGAGGGAATTTTGCTCAAACCTAGCATGGTTACACCTGGGGCTGAACATAAGGAAAAGGCTTCTCCGGAAACCATTGCGAAATATACTCTAACCTTGCTTAGAAGAAGAGTTCCTCCAGCAGTACCCGGAATCATGTTTTTGTCGGGTGGACAATCTGAAGTGGAAGCGACACTTAATCTAAATGCAATGAACCAAAGCCCCAACCCATGGCATGTTTCTTTCTCGTATGCTCGAGCTCTTCAGAACACCGTGCTAAAGACGTGGAAAGGACACCCTGAGAATGTGGAAGCTGCTCAAAAGTCTCTTTTGGTGCGCGCAAAAGCAAACTCCTTGGCTCAACTTGGAAGATATTCTGCGGAGGGTGAGAGTGAAGAGGCAAAGAAGGGAATGTTTGTCAGGGGCTATGTCTACTAA 1167 0.4756 MAMASAKINTLSSQWIAHSTFSPRRGSSHRRVSLPIRASSYQHELVQTAKSIATPGRGILAIDESNATCGKRLASIGLDNTEVNRQAYRQLLLTTPGLGEYISGAILFEETLYQSTTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVSIPCGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHSIERTLEVAEKVWSEVFFYLAENNVMFEGILLKPSMVTPGAEHKEKASPETIAKYTLTLLRRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTVLKTWKGHPENVEAAQKSLLVRAKANSLAQLGRYSAEGESEEAKKGMFVRGYVY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03493 388 FunFam Fructose-bisphosphate aldolase 27 387 - -
Vimu3g03493 388 CDD FBP_aldolase_I_a 44 368 - -
Vimu3g03493 388 NCBIfam fructose-bisphosphate aldolase class I 44 364 - -
Vimu3g03493 388 SUPERFAMILY Aldolase 35 388 - -
Vimu3g03493 388 Gene3D Aldolase class I 29 387 IPR013785 -
Vimu3g03493 388 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 249 259 IPR029768 -
Vimu3g03493 388 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 39 388 IPR000741 GO:0004332|GO:0006096
Vimu3g03493 388 Pfam Fructose-bisphosphate aldolase class-I 44 388 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03493 Vimu-Chr3 47813469 47817463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03493 39 388 Miscellaneous Gene Families AT3G52930 54.802 6.66e-132 380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03493 3 47813469 47817463 Vimu3g03493 3 47813469 47817463 ECH