Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03492 ATGCTCTCGGTCACGCAACCTTCGTGCATTCCCAAAACCCTAAAACCCTTCATTCCCCTTCCGTCTCCGGCCATGAAGGACCGCCGCACGCTGTCCTCCTATGGCTCCGTTTACATTCCGCCGCACCTCCGCTTGCGCTCCGTCGCCAATTTCAACAACTCACCCTCTCCGCTTCGCGCCAAACCCCACGAAAACCCTACACACACCATTTCTACTCTGCAACCGCCGTTCACGGAACGAGTTACCGATAAGGCACGCTCGCTCTTCGTTTCTGCTTATGACGATACCGTTTCCGAGGAAGGCTCCGATCGTGAATTCGAACTTCCCTCACCAGTGCGTGCTTCCAAATTTGCTTGTTTGCCGAATGCTTCGCTTGATGATAACACTGACGAATGGAAGCGGAAATTTACCGTGCTCTTAAATGACAAGAGTAAGCACGAATTAATCTCGAGGGAGAAAAAGGATAGGCGTGATTTTGAGCGAATAGCAGTTATTGCAAGCGGAATGGGGTTGTATAGCCATATGTATGCTAAGGTTGTTGTCTTCAGTAAGGTCCCACTTCAAAATTACAGATATGATTTGGACGATCGGAAGCCTCAGAGGGAGGTGAGCTTGTCTTTCACCACATTTACCCGTGTTAAGGCGCATTTTGAGGAATATCTTAGCCAAAAATCCAGGATAAACAAAAGCTGTTTGGATTTGTCATCTGCAAGATCTAGCAGTAATTGCAGTATTGGTATGGATGAGGGGCTTTTTGAGCAACCTGAGCCACTAGCTTCCAGTAAGGCTGTTATGGAGAAAATTGTTTGGCAGAGGAGCTTACAAATGCGTTCTCAGCAGCAAGCTTGGCAGGAATCTGCTGAAGGAAGTAGAATGCTAGAATTTCGCAGAAGTCTCCCAGCTTATAAAAAGAAAGAAGAAATATTATCAGTCATATCAAGGAATCAGGTAGTTATCATTTCAGGCGAAACAGGTTGTGGCAAGACAACACAAATTCCACAATTCATTTTAGAATCTGAGATAGAATCAGTTCGAGGAGCTGCTTGTAATATCATATGCACACAGCCAAGACGCATTTCAGCCATGTCAGTTTCTGAAAGAGTGGCCTTTGAGAGGGGAGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGACTTGAGGGTATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATTTTATTAAGAAGATTACTGGCTGATAGAAAGTTGAAAGGCGTAACTTACGTTATCGTGGATGAAATTCATGAGCGAGGGATGAATGAAGATTTTCTGCTTATTATCCTTAAAGAACTCCTTCTCCATCGGCCAGAACTGAAACTGATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTTTCTTCATACTTTAACGGGGCTCCGACTATGTTTATTCCTGGCTTCACGTACCACGTCAGAACCCATTTTTTGGAGAACATTCTTGAAATGACGGGCTACAGATTAACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAAGATGTGGAAAATGAACAGACAGGTTCCAAGAAAGAGGAAAAGTAAAATTGCTTCTGTCGTAGAGGATGCAATTAGAGCTGCTGATTTCAAAGATTACAGCCCACATACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGCATTGGTTTTAATCTCATAGAATATATTTTGTGCAATATATGTGAGAATGAAAGACCTGGTGCTGTTTTGGTTTTCATGACTGGATGGGATGATATAAGCTGTCTGAAAGAGAAACTCCTGACTCACACTGTCTTGGGAGATCCAAACCGTGTTCTGTTGCTTACATGTCATGGCTCAATGGCTAGCTCAGAGCAGAGATTAATATTTGAAGAGCCTGAAGCTGGAGTAAGAAAAATAGTGCTAACAACAAATATTGCTGAAACCAGTATCACGATAAATGATGTTGTTTTTGTTCTTGACTGTGGAAAAGCAAAAGAAACATCGTATGATGCTCTGAACAACACACCTTGTCTGCTTCCTACATGGATTTCTAAGGTTTCCTCTCAACAAAGAAGAGGAAGAGCTGGTCGGGTACAACCAGGAGAGTGTTACCATCTCTATCCTAGATGTGTGTATGATGCATTTTCGGAGTATCAATTGCCAGAAATTTTGAGAACACCTCTGCAGTCCCTCTGTTTACAAATTAAAAGTTTGAGACTTGAAAGCATATCTGAGTTCTTGTCCAGGGCTTTGCAGTCTCCTGAGATACTTGCGGTGCAAAATGCAATTGAATATTTAAAAATAATTGGAGCTTTGGATGAGAAAGAGAATCTCACTATTCTAGGGCGCTATTTGACAATGCTTCCTATGGAACCCAAACTTGGCAAGATGCTAATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGCTGGTCTCAGTGTGCGAGATCCTTTTCTAACACCGTTGGATAAAAAAGATCTTGCAGAGACTGCAAAATCTCAATTCTGTGGTGAATATAGTGACCACCTTGCACTTGTAAGGGCATATGAAGGTTGGAAAGATGCTGAAATGGACATGGGTGGATATGAATACTGTTGGAAAAATTTCCTTTCCTTACAATCCATGAAAGCTATTGATGCTCTTCGGAGAGAGTTCGCATGCCTGCTCAAGGATACTGGATTAGTTGATAGCAACGCAGCCAGCTGCAATGCATGGAGCTCTGATCTAAATCTTATCCGAGCAGTTATTTTCTATGGCCTATATCCTGGAATTGGTTCTGTTGTGAATAATGAGAAATCATTCTCTTTGAAAACAATGGAGGATGGGCAAGTGCTCCTATATTCGAACTCAGTGAATGCTCGGGAAACTAAAATTCCATATCCATGGCTTGTTTTTAACGAGAAGATAAAAGTGAACTCGGTTTTTCTCCGCGACTCAACAGCCGTGTCTGATTCAGTGGTGCTTCTGTTTGGAGGAAGCTTATTGAAAGGAGATGCTGATAACCATTTAAAGATGTTGGGAGGATATCTTGAGTTTTTTATGGATCCGAGTGTTGTTGAAATGTACCAGAGTATAAGGAGAGAACTTGATGCCTTCATTCAGGGAAAACTACTTTTTCCAAGAATGGGCATACAGTGGTATCAAGATCTCCTATCTGCAGTACGGCTGCTGATTTCCAATGACCAATGTGAAGGTAGATTTGTATTTGGTCGCCAGGTCCATAAACCATCTAAAAAATCTATTATGTTGGCCTCACACCCAACCTTGGTTTCAAGGACTGAGAGTGGACCTGGGGGAGATAATTCTAAAAGTCAGCTCCAAACATTGCTTACGAGAGCAGGGTGTGCAGCACCCGTCTACAAGACTAAACAATTGAAGAACAATCAGTTTCAGGCTGCAGTTGAATTCAATGGAATGCAGATAATGGGTCAACCTTGTAACAATAAAAAGAGTGCAGAAAAAGATGCTGCTGCTGAGGCATTGCAGTGGCTTATGGGTGGAAAGCAAGCAGGCAGGGAGTATATCAATCACTTGTCAATGTTACTTAAGAAAAGTAAGAAGGATCACAATTAA 3582 0.4227 MLSVTQPSCIPKTLKPFIPLPSPAMKDRRTLSSYGSVYIPPHLRLRSVANFNNSPSPLRAKPHENPTHTISTLQPPFTERVTDKARSLFVSAYDDTVSEEGSDREFELPSPVRASKFACLPNASLDDNTDEWKRKFTVLLNDKSKHELISREKKDRRDFERIAVIASGMGLYSHMYAKVVVFSKVPLQNYRYDLDDRKPQREVSLSFTTFTRVKAHFEEYLSQKSRINKSCLDLSSARSSSNCSIGMDEGLFEQPEPLASSKAVMEKIVWQRSLQMRSQQQAWQESAEGSRMLEFRRSLPAYKKKEEILSVISRNQVVIISGETGCGKTTQIPQFILESEIESVRGAACNIICTQPRRISAMSVSERVAFERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRKLKGVTYVIVDEIHERGMNEDFLLIILKELLLHRPELKLILMSATLDAELFSSYFNGAPTMFIPGFTYHVRTHFLENILEMTGYRLTPYNQIDDYGQEKMWKMNRQVPRKRKSKIASVVEDAIRAADFKDYSPHTQESLSCWNPDCIGFNLIEYILCNICENERPGAVLVFMTGWDDISCLKEKLLTHTVLGDPNRVLLLTCHGSMASSEQRLIFEEPEAGVRKIVLTTNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSSQQRRGRAGRVQPGECYHLYPRCVYDAFSEYQLPEILRTPLQSLCLQIKSLRLESISEFLSRALQSPEILAVQNAIEYLKIIGALDEKENLTILGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAETAKSQFCGEYSDHLALVRAYEGWKDAEMDMGGYEYCWKNFLSLQSMKAIDALRREFACLLKDTGLVDSNAASCNAWSSDLNLIRAVIFYGLYPGIGSVVNNEKSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSLLKGDADNHLKMLGGYLEFFMDPSVVEMYQSIRRELDAFIQGKLLFPRMGIQWYQDLLSAVRLLISNDQCEGRFVFGRQVHKPSKKSIMLASHPTLVSRTESGPGGDNSKSQLQTLLTRAGCAAPVYKTKQLKNNQFQAAVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLMGGKQAGREYINHLSMLLKKSKKDHN 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03492 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 309 476 IPR014001 -
Vimu3g03492 1193 CDD SF2_C_RHA 543 705 - -
Vimu3g03492 1193 FunFam Putative ATP-dependent RNA helicase DHX36 739 843 - -
Vimu3g03492 1193 FunFam DExH-box ATP-dependent RNA helicase DExH3 253 477 - -
Vimu3g03492 1193 Gene3D - 257 477 IPR027417 -
Vimu3g03492 1193 FunFam DExH-box ATP-dependent RNA helicase DExH3 559 715 - -
Vimu3g03492 1193 PANTHER ATP-DEPENDENT RNA HELICASE 249 1016 - -
Vimu3g03492 1193 Pfam Helicase conserved C-terminal domain 565 696 IPR001650 -
Vimu3g03492 1193 Pfam DEAD/DEAH box helicase 306 459 IPR011545 GO:0003676|GO:0005524
Vimu3g03492 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 563 737 IPR001650 -
Vimu3g03492 1193 SMART DRBM_3 1105 1168 IPR014720 -
Vimu3g03492 1193 FunFam DExH-box ATP-dependent RNA helicase DExH3 1083 1172 - -
Vimu3g03492 1193 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 915 996 IPR011709 -
Vimu3g03492 1193 Pfam Double-stranded RNA binding motif 1105 1167 IPR014720 -
Vimu3g03492 1193 CDD DEXHc_RHA-like 315 475 - -
Vimu3g03492 1193 Gene3D - 562 715 IPR027417 -
Vimu3g03492 1193 SMART ha2_5 759 849 IPR007502 GO:0004386
Vimu3g03492 1193 SMART ultradead3 297 490 IPR014001 -
Vimu3g03492 1193 SUPERFAMILY dsRNA-binding domain-like 1100 1171 - -
Vimu3g03492 1193 Gene3D - 739 840 - -
Vimu3g03492 1193 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1104 1169 IPR014720 -
Vimu3g03492 1193 Pfam Helicase associated domain (HA2) 760 833 IPR007502 GO:0004386
Vimu3g03492 1193 Gene3D - 1084 1172 - -
Vimu3g03492 1193 SMART helicmild6 588 697 IPR001650 -
Vimu3g03492 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 862 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03492 Vimu-Chr3 47799292 47811337 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03492 3 47799292 47811337 Vimu3g03492 3 47799292 47811337 ECH