Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03490 ATGAGAACAATGGTTGCCACTTTCTCGTATCCAGCTTCTACCTACTTTGTTAGGTCTTGTTCCATGAGAGAAAACCATGACCAACTTAAGCAGCCAGTGAACACCGGCATCAGAACTAATGGGAGTTTTAGGTCGCCAATTAAAGTTGAGACACTGGGCCAAATACCTGCAACCACTTCCACCACTCTCGGTCAAGCTGTTACAATTGATGAAAATTGTCTGCGCCAAAACATCCCAACAAAGAAGAAAATGGTTGATCCTCATCGTCAAGGGCTCATCACTGAAGGTGGAGTTGGTTATAGACAGACCATTGTCATTAGGTCCTATGAAGTTGGAGCTGATAAAACCGCCACGCTTGAGAGCATCCTCAATCTTCTTCAGGAAACAGCATTAAACCATGTTTGGATGTCTGGGCTGCTGGGTGATGGGTTTGGGGCGACACACGGAATGGTGAGGAACGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTCTGATTGATTACTATCCCATCTGGGGAGAGGTAGTTGAAATTGACACATGGGTTGGAGCATCAGGCAAGAATGGAATGCGGCGGGACTGGCTGATAAGAAGCCAAGCCACAGGCCACATTTTTGCACGTGCGACAAGCACGTGGGTGATGATGAACCGCAAAACAAGACGTCTCTCCAAGATGCCAGAAGAGGTGAGAGCAGAGCCCAAGAGAAGTGATTTGGACATGAACCAACATGTTAATAATGTGAAGTATGTAAGATGGATGCTAGAGACCATCCCAGACCAAATTCTGGAGGGGCACCAATTATCTAGTATCACACTGGAGTACAGAAGGGAGTGTGGAAGCTCAGATATTGTTCAATCATTATGTGAACCAGAAGATGATGAAATACTTCATGGTGTGGTAGAGCCAGATTACTGCACAAATCTTCTCAATGGGTTATCATCAGATATTATAAATGGCGGTGGAGTGCTGACTTACCTTGAGCAGAGGCCATTAAGGTATACACACCTTCTACAAATCAAAGGAGACAAACAAAACGACGAAATTGTCAGAGGAAGGACAACATGGAAGAGGAAGATTGTTACAATGCCATTTTCCACTTAG 1101 0.4478 MRTMVATFSYPASTYFVRSCSMRENHDQLKQPVNTGIRTNGSFRSPIKVETLGQIPATTSTTLGQAVTIDENCLRQNIPTKKKMVDPHRQGLITEGGVGYRQTIVIRSYEVGADKTATLESILNLLQETALNHVWMSGLLGDGFGATHGMVRNDLIWVVSRMQVLIDYYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNRKTRRLSKMPEEVRAEPKRSDLDMNQHVNNVKYVRWMLETIPDQILEGHQLSSITLEYRRECGSSDIVQSLCEPEDDEILHGVVEPDYCTNLLNGLSSDIINGGGVLTYLEQRPLRYTHLLQIKGDKQNDEIVRGRTTWKRKIVTMPFST 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03490 366 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 38 232 IPR045023 GO:0006633|GO:0016297
Vimu3g03490 366 CDD 4HBT 100 216 - -
Vimu3g03490 366 Gene3D Hotdog Thioesterase 233 362 - -
Vimu3g03490 366 FunFam Acyl-[acyl-carrier-protein] hydrolase 92 176 - -
Vimu3g03490 366 Pfam Acyl-ACP thioesterase 99 232 IPR002864 GO:0006633|GO:0016790
Vimu3g03490 366 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 233 363 IPR029069 -
Vimu3g03490 366 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 99 233 IPR029069 -
Vimu3g03490 366 Gene3D Hotdog Thioesterase 92 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03490 Vimu-Chr3 47767101 47770069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03490 84 366 Acyl Lipid Metabolism Gene Families AT1G08510 44.340 5.93e-86 264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03490 3 47767101 47770069 Vimu3g03490 3 47767101 47770069 ECH