Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03489 ATGGAGCCAGAGAATCACAAAACGAAGGCAGTGAACGTGCTTCGAAGCAGAATATGCGACCCCAAATTCATCTTCAACAACGATTATCCAGACAGCAACTACAGCAAACTGAAATTCATGATATCGAGTTCGGTGACGGAAGCGTGCAACAATTCTATTCTGCTACTCGGTCCGCGCGGCTCCGGAAAGAACGCGGTTTTGGAAGTTGTCATTCAAGATTTGCTGCAAGAGTATCCAGACTCGATTTCAGTGATACGGTTGAATGGCCTTTTACATAGCGACGACGTCTCTGCATTCAAGGAAATAGCTAGGCAGTTGTGCATGGAGCATCAATTGCTATTCTCAAAAGCGGCATCCTTTGATGACAACTCCCAGTTTATGGTTGCCATTCTAAAGGAATGTGGATTAGCACATAAAACAGTGATATTTGTTCTGGAAGAGTTTGACTTGTTTGCTCAGGGTAAACAGCGGTTACTTTATAGTTTGTTAGATGCAATGCAATCAATTACATCACAGGCTGTTGTACTTGGCATTAGTTGCCGTTTGGATGCTGATCAACTTTTGGAGAAAAGAGTACGATCTCGGTTTTCCCATAGAAAGCTGTTGTTCTTACCACCTTCAATGGAAGATTCACAGAAGTTACTAATGCACATGCTGACATTACCAATCGATTCAAGCTTTCCGCACGATTATGCTACTGAGTTTAACACGAAGGTCCAAAATATTATAGAAGATAGAAAGTTCAAAGAAACCCTACAAAAATATTTAAATGTTGATTCCTCTGTCAAACATTTGCTGAGGTTCCTATTCTGTGCAGTCTCTCGTATGGATTTGCAGACTGGGTTCTTGTCTCAGGAGAGCTTTGAAATTGCATTTTCAAGCATCCAAAGACAACCGAAACTAGAATGTTTAAGAAATTGCTCCAATTTAGAACTTCATATTTTGGTTTGCATGAAGAGATTGGAAGTTAAAGAGAAAAGTTTATGCAATTTCAATTCTGTAATGAAAGAGTATAAAAGTATGCATGATTCCTTCCGAACTTCTGAATATTATTCGAGAAATGTCTGCTTACGGGCATTTGAACACCTTCTACATCTTGAGATGATATGTTTCACAGACAATAGAGGACAGAATTTGTCTGTTGAATTCCGGCCTGTAAAGCTTTTAATTTCATCTGCTGAACTACATCAGGGACTGAGAGCGTATAATTCATGCCCTGCTTACCTTATAAAGTTAATGGATCGTGAAGGCTGA 1254 0.3971 MEPENHKTKAVNVLRSRICDPKFIFNNDYPDSNYSKLKFMISSSVTEACNNSILLLGPRGSGKNAVLEVVIQDLLQEYPDSISVIRLNGLLHSDDVSAFKEIARQLCMEHQLLFSKAASFDDNSQFMVAILKECGLAHKTVIFVLEEFDLFAQGKQRLLYSLLDAMQSITSQAVVLGISCRLDADQLLEKRVRSRFSHRKLLFLPPSMEDSQKLLMHMLTLPIDSSFPHDYATEFNTKVQNIIEDRKFKETLQKYLNVDSSVKHLLRFLFCAVSRMDLQTGFLSQESFEIAFSSIQRQPKLECLRNCSNLELHILVCMKRLEVKEKSLCNFNSVMKEYKSMHDSFRTSEYYSRNVCLRAFEHLLHLEMICFTDNRGQNLSVEFRPVKLLISSAELHQGLRAYNSCPAYLIKLMDREG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03489 417 Pfam AAA ATPase domain 35 168 IPR041664 -
Vimu3g03489 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 253 IPR027417 -
Vimu3g03489 417 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 8 416 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vimu3g03489 417 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 214 397 IPR032705 -
Vimu3g03489 417 PIRSF ORC4 3 417 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vimu3g03489 417 Gene3D - 31 205 IPR027417 -
Vimu3g03489 417 FunFam Origin of replication complex subunit 4 31 205 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03489 1 414 Core DNA Replication Machinery Family AT2G01120 63.357 0.0 557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03489 3 47757149 47762297 Vimu3g03489 3 47757149 47762297 ECH