Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03481 ATGGAACGCGACTTCGCCCTCAACCTCCTTGTCAAAGCCAACAAGCTCAAGCTCGTCGAAATGCTGCACTCCAAGATGGTGGCTGACGGCGTCGCGCCTGACGCTTCTACCTTCAACATCTTGATTAGGGCCCTCTGCAAGGCTCACCAGCTGCGGCCTGCCATTCTCATGCTCGAGGACATGCCGAACCACGGCCTCAGGCCCGACGAGAAAACGTTCACCACGCTCATGCAGGGATTTATCGAAGAGGGAACTCATGGTGGAGTCGGGTGCACGCTAACTACTGTTTCCGTGAATGTTTTGGCGAATGGGCTTTGCAGAGAGGGTAGAATTGAAGAAGCTTTGCGATTCATTCACGATGAAGAAGGGAGCGGGCATATCAAACAGGGTTTGGAGACGATGGATTTCATGCTTGAGAAAGGCATGGAGGAAAGTCTGATACAGAAGCAGGAAGAAGAAAGAGAAGAAAAAAGAGTGAGATGGAGTGGTTTCAGTGAAGAAATGAGAAGGATAAGTGTTATAGCAGGGCCTATGGTGGCTGTGGTTTCTTCCCAATATTTGCTGCAAATTGTGGCTACCATGATAGTTGGTCATTTGGGTGAACTCTATCTCTCTAGCGCCGCCTTAGCCATTTCCTTAGCAGGAGTCTCTGGTTTCAGTTTTCTTATGGGAATGGCTAGTGGACTTGAGACAATTTGCGGACAGGCTCATGGAGCTCAGCAATATCAAAAAATTGGACGGCAAACATACACTGCCATTTTCTCTCTTATATTGGTTTGTATTCCCCTGTCTGTCCTTTGGCTCAACATGGAAAACATACTAGTTTTCATGGGCCAGGACCCTCTAATTTCACATGAATCAGCGAAGTTCACACTTTGGCTTCTACCAGCACTTTTTGCATTTGCAATTCTGCAGCCATTAGTTCGATATTACCAAATCCAAAGTATGATTCTTCCCATGCTTGCAACTTCTTTTGTCACACTCACTATTCATATACCTCTTTGTTGGGCCCTGGTGTTCAAAACAAGGCTGAATAATGTTGGTGGAGCTTTGGCAGTTAGCATTTCAATGTGGTCAAACGTGATTATGCTTGGATTATACATGAGATACTCCTCTGCGTGTGCAAAAACCCGTGCACCCATTTCTTTGGATCTGTTTAAAGGAATGTGGGAGTTCTTTCGGTTTGCCATCCCTTCGGCAGTAATGGTTTGCCTTGAATGGTGGTCGTATGAGCTGCTTGTATTGCTGTCAGGGCTGTTACCAAATCCAGCACTTGAAACTTCAGTTCTATCAGTTTGCACAAGGGTTGCAAATGAATTAGGAGCTAGGAAACCACATGCTGCTCGTGTTGCTGTGTTAGCTACTATGTCTCTTGCAGTCATTGAGACAAGTGTAGTAAGCGCAACACTCTTTGCCTGTCGCCATATTTTTGGTTATGTCTTCAGTAATGAGAAGGAAGTTATTGATTATGTCACTGTCATGGCCCCTCTCGTATGTATATCTGTTATACTAGACAGCTTACAAGGTGTTCAAACAGGAATTGCAAGAGGTTGTGGATGGCAACATTTAGGAGTTTTTGTAAATCTTGGGGCTTTCTACCTTTGTGGGATTCCAGTGGCTGTCATATTGGCATTTGTGGTGCGAGTGGGAGGAAAAGGACTTTGGATTGGTATACAATGTGGTGCTCTTGTTCAAACTACTCTACTTTCTGTCATAAGCAGTAACATAAATTGGGAAAAGCAGGCCATCAAGGCAAGAAAGAGGTTATTCGATGATGAATAG 1782 0.4506 MERDFALNLLVKANKLKLVEMLHSKMVADGVAPDASTFNILIRALCKAHQLRPAILMLEDMPNHGLRPDEKTFTTLMQGFIEEGTHGGVGCTLTTVSVNVLANGLCREGRIEEALRFIHDEEGSGHIKQGLETMDFMLEKGMEESLIQKQEEEREEKRVRWSGFSEEMRRISVIAGPMVAVVSSQYLLQIVATMIVGHLGELYLSSAALAISLAGVSGFSFLMGMASGLETICGQAHGAQQYQKIGRQTYTAIFSLILVCIPLSVLWLNMENILVFMGQDPLISHESAKFTLWLLPALFAFAILQPLVRYYQIQSMILPMLATSFVTLTIHIPLCWALVFKTRLNNVGGALAVSISMWSNVIMLGLYMRYSSACAKTRAPISLDLFKGMWEFFRFAIPSAVMVCLEWWSYELLVLLSGLLPNPALETSVLSVCTRVANELGARKPHAARVAVLATMSLAVIETSVVSATLFACRHIFGYVFSNEKEVIDYVTVMAPLVCISVILDSLQGVQTGIARGCGWQHLGVFVNLGAFYLCGIPVAVILAFVVRVGGKGLWIGIQCGALVQTTLLSVISSNINWEKQAIKARKRLFDDE 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03481 593 Gene3D Tetratricopeptide repeat domain 4 173 IPR011990 GO:0005515
Vimu3g03481 593 PANTHER MULTIDRUG RESISTANCE PROTEIN 160 578 - -
Vimu3g03481 593 NCBIfam MATE family efflux transporter 177 555 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g03481 593 CDD MATE_eukaryotic 167 584 IPR045069 GO:0042910|GO:1990961
Vimu3g03481 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Vimu3g03481 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 34 68 IPR002885 -
Vimu3g03481 593 Pfam PPR repeat 96 118 IPR002885 -
Vimu3g03481 593 Pfam PPR repeat family 39 80 IPR002885 -
Vimu3g03481 593 Pfam MatE 177 336 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g03481 593 Pfam MatE 432 542 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g03481 593 NCBIfam pentatricopeptide repeat 37 70 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03481 Vimu-Chr3 47719631 47724776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03481 6 82 Glycosyltransferase AT1G05670 29.630 4.79e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03481 3 47719631 47724776 Vimu3g03481 3 47719631 47724776 ECH
Vimu3g03481 3 47719631 47724776 Vimu8g01614 8 22004305 22005902 ECH