Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03479 ATGGCTTCACGCAGACTCGTTTCGTCTCTGCTTCGATCTTCTCTCCGCAGATCTCAATCCAAACCTTCAATTGCCGCATCTGCATCTAGACTCTCTTCCACCAACCGTGCTTCACCGCACGGATTCTTGCTCAATCGCATCGCGGAGTACGCCACCGCGTCTGCTGCTGCTGCCGCTCCTCCTTCTGCGCCTCCGCAAAAGAAGGAAGTTGGCGGTGGTGGGAAGATCACCGATGAGTTCACTGGGAAGGGTGCGATCGGACAGGTTTGCCAGGTAATTGGTGCCGTCGTTGATGTCAGATTTGACGAGGGTTTGCCTCCGATCCTGACTGCCCTCGAGGTTCTGGATCACTCCTCCAGACTGGTGTTGGAAGTCGCTCAGCATTTGGGTGAGGGCGTTGTCCGAACCATTGCTATGGATGCCACTGAAGGAGTCGTTAGAGGGTGGCGCGTCCTCAACACCGGCTCCCCCATCACTGTTCCTGTTGGTAGGGCTACACTTGGCCGTATCATTAATGTCATTGGTGAGCCTATTGACCAGAAGGGCGACCTCACAACCGAGCATTATTTGCCTATTCATAGAGAAGCTCCTTCTTTTGTTGAGCAAGCAACTGAGCAGCAGATTCTTGTTACTGGGATCAAGGTTGTTGACCTGCTTGCACCTTATCAAAGAGGAGGAAAGATTGGGCTGTTTGGTGGGGCTGGTGTAGGAAAAACTGTCCTTATTATGGAACTTATTAACAATGTTGCAAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGTGAGGGTAATGACTTGTATAGAGAAATGATTGAGAGTGGTGTTATCAAGCTTGGTGAGAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTACGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCTCGTGTTGGTCTTACCGGGCTTACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTTTTTGTAGACAACATTTTCCGTTTTACCCAAGCTAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCAACCAACCTTGTCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACAACCAAAAAGGGTTCAATCACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCAGCAACAACCTTTGCTCATCTGGATGCAACAACAGTGTTGTCACGACAGATCTCCGAGCTTGGTATCTATCCTGCTGTTGACCCCTTGGATTCTACATCTCGTATGCTGTCACCCCTTATTTTGGGTGCGGAGCACTATGAAACTGCTCGTGGTGTACAGAAGGTTCTTCAGAACTACAAGAATCTTCAAGATATCATTGCTATTTTGGGAATGGACGAGCTTAGTGAAGATGATAAATTGACTGTTGCGCGTGCCCGCAAGATTCAGCGATTCTTAAGCCAGCCTTTCCATGTTGCTGAAGTATTCACTGGTGCTCCAGGAAAATATGTTGAATTGAAGGAGAACATTACCAGCTTCCAGGGTGTGTTGGATGGCAAGTACGATGACCTCCCAGAGCAATCGTTTTACATGGTTGGTGGCATTGAAGAGGTCATTGCCAAGGCCGAGAAAATTGCTAAGGAGTCTGCAGCATCTTAA 1677 0.4896 MASRRLVSSLLRSSLRRSQSKPSIAASASRLSSTNRASPHGFLLNRIAEYATASAAAAAPPSAPPQKKEVGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPIDQKGDLTTEHYLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGAEHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKENITSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAAS 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03479 558 Hamap ATP synthase subunit beta [atpB]. 84 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vimu3g03479 558 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 212 433 IPR000194 GO:0005524
Vimu3g03479 558 Pfam ATP synthase F1 beta subunit 1 46 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vimu3g03479 558 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 83 157 IPR036121 GO:0046034|GO:1902600
Vimu3g03479 558 CDD F1-ATPase_beta_CD 159 438 - -
Vimu3g03479 558 PANTHER ATP SYNTHASE 68 554 - -
Vimu3g03479 558 CDD ATP-synt_F1_beta_C 440 547 - -
Vimu3g03479 558 ProSitePatterns ATP synthase alpha and beta subunits signature. 424 433 IPR020003 GO:0005524
Vimu3g03479 558 Gene3D - 158 435 IPR027417 -
Vimu3g03479 558 SMART AAA_5 224 496 IPR003593 GO:0016887
Vimu3g03479 558 FunFam ATP synthase subunit beta 158 435 - -
Vimu3g03479 558 NCBIfam F0F1 ATP synthase subunit beta 86 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vimu3g03479 558 Gene3D - 436 558 IPR024034 -
Vimu3g03479 558 FunFam ATP synthase subunit beta 75 157 - -
Vimu3g03479 558 FunFam ATP synthase subunit beta 436 555 - -
Vimu3g03479 558 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Vimu3g03479 558 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 436 552 - -
Vimu3g03479 558 Gene3D - 75 157 - -
Vimu3g03479 558 FunFam ATP synthase subunit beta 1 50 - -
Vimu3g03479 558 CDD ATP-synt_F1_beta_N 85 158 - -
Vimu3g03479 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Vimu3g03479 558 PIRSF ATPase_subunit_beta 3 557 - -
Vimu3g03479 558 Gene3D ATP synthase, F1 beta subunit 1 50 IPR042079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03479 Vimu-Chr3 47704286 47707564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03479 122 494 Primary Pumps ATPases(2) AT1G20260 28.212 1.49e-29 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03479 3 47704286 47707564 Vimu3g03479 3 47704286 47707564 ECH