Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03473 ATGGCCGCGTCGCCATCGTCCTCCTCCGCGGCCTCGGCCAACATCGTGCTCGCGATCTTCGAGAAGAAGACCAATACCGTTGATATGTATCGCCCCCTCCGCAATTACGTGGCGTATCACTACTCCGAGCGCGAAGCGCAAAACGTCGAAGACGATCTACAAACCCTAAAGCAACTTCGCTACGAAATCGAACGTCACCTCGATCCGTCCCTGCCGGCTCGCCGCGATGTCCTCCAAACCTACTTCAAATCTCTTTGCCTTGTTGAGACGCGCTTCCCAATCTCCCCGGACCCTGACCACGTCAACGCCCTCACCTTTGTTTGGTTCGATGCCTTCAAGCCAAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCCGCCGTGCTCTTCAATTTGGGCGCCGTTTACAGTCAGATTGGATGTTCATACGATCGGAACACCGTTGACGGTCGACGCCAGGCCTCGCATGCCTTCATTGCTGCTGCCGGTTCCTTTGCCTTCCTCCGCGACAACGCCTCTATGAAGGCATCCGTTGGGAATTCCACCACCGTTGATTTGACCGTTGAGTGTGCTGGGATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAAGAGTGTGTCTTCGAGAACACCATTGCTAAAGGGAGCACTCCCGGTGTCTGTGCCAAGATCTCCAGACAGGTTGGGATATATTACGAGGAAGCTTTAGCTGCACTGAATGTTGCACCTTTGAGCCAGCATTTTGAAAAGTCCTGGATAGTTCATGTACAGTTAAAGGCTGCGCTGTTTTATGCAGAAGCTTGTTATAGGTATGGATTGGAGCTGCATGATAAAGAGGAAATAGCAGAGGAGATTGCACGACTACGTAGTGCTGTTAATGTGTTGACTGAGGCGAAGAAGAGCTCTAAGGGTGCTGCGGTGCAAATTCTTGATGCAATTGGCAAGTTAGAGGCCAATATTAATCGGAACCTTGAAAGAGCTGTCAAGGAGAATGATAGGGTTTATCTCATGAGAGTTCCTTCACCAAGTTCGTTAGCCCCCATTCCATCATTTTCTATGGTGAAGCCCATGCCAATGAATGAGGTGCTGGATGCAAGCAAAGAAAAGATGTTTGCAAGTCTTGTTCCTGACAGCAGTGCAAAGGCCCTCTCACGGTATACTGAAATGGTCGATGATGTTATAAGAACACAGGCTGAAAAGTTGCAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAACTGCCGGATTCCATTCTTGCTTTGGAAGGAAATTTTACTCTTCCAACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAAGCAGAGTTGCAGCAACTTAAGGACCTAAGGAGGGTGAATCAAGAGTTGCTGGTCCAGACTGAGGAATTGTTGCAGAAGGAAGCAAGAGAAGATTCTCAATTTAGAAGTCAATTTGGCACGAAATGGACCAGGCCCCAGTCAAGCACCTTGACTAAAAACTTGCAGGATAGGCTCAACCGGTTTGCAGGTAACTTGAAGCAGGCTGCTGAAAGTGATGGTAGGATTGAGCGATCAGTTAGAGAACATTCAGCACTCATGTCGATCCTTGATGCTCGTCCGATTGAATCCGCACTTCCAAGCTTGGCAAGGCCTATTATGTCTTTTGATCAAAATGAAGATGCTATTGTGGGGTCTCTCAAGCAAAGTTTGAGGCAACTAGAAACTCTCGGAGCTCAAAGGGCCGGTCTTGAAGATATGCTTAAAGATATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACTTCCACTGGTTCTTATGATGATCTCTTCAAGAAGGAGCTAGCAAAATATGACCATATTTGTGATGAAATAGCTCAAAACATTGAGGCTCAAGAGCAATTGTTGCTACAAATCCAGGCTCAAAATGATGAGTTCTCTGCTATCTTCAATCTTGAAGATTACAAAGCTTCGCGTGAAAAAGCCTACAAGCAGATTGAAGCTGCCATTGCAAAATTTCGAGAGATAAAGGAAAACATCAATGAAGGGTTAAAATTCTATGTTACCCTGCAGGATGCAATCACAAACGTAAAGCAGCAGAGCAACGACTTTGTAATGACGAGGAACATTCAGTGCAGGGAAATGATTGAAGATGTTCAGAGACAATTGGCTGGTTTGAGTTTCCAGGACAAAAACGCAGGTGCTTCTTTTAACAGCAACTACCCATCAGTTGGAAGCCAAAATCAAAGAGCCAGTACACAAACAGATCCTCGGCCACAAGCACCTTATTATCAGCCAGTTGAGCAGCCACCAGTTGCTCCCTATGGCCATCATGCACCTCCCCCATATGGTGGTCCTGCGCACCATCAGCCTCCACCTCCATACCACATTCCACCATCATCAACTGCTCCATACCCACCCCCTCAGGTTCACCAGCAGCCACCGGGAAACCATGAGTATGGCCAGCCAGCATATCCAGGATGGCGTGGTCCCTACTATAATACACAAGCACAGCAACCTGGCTCTGTGCCACGACCTCCTTATACAATTCCATCTCCATATCCTCCGCCTCACCAAAGTGGTTACTATAAGCAGCAATAG 2616 0.4801 MAASPSSSSAASANIVLAIFEKKTNTVDMYRPLRNYVAYHYSEREAQNVEDDLQTLKQLRYEIERHLDPSLPARRDVLQTYFKSLCLVETRFPISPDPDHVNALTFVWFDAFKPKQKASQQNIHLEKAAVLFNLGAVYSQIGCSYDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASVGNSTTVDLTVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGIYYEEALAALNVAPLSQHFEKSWIVHVQLKAALFYAEACYRYGLELHDKEEIAEEIARLRSAVNVLTEAKKSSKGAAVQILDAIGKLEANINRNLERAVKENDRVYLMRVPSPSSLAPIPSFSMVKPMPMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHSALMSILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLKDMKRKDDILPKLMTSTGSYDDLFKKELAKYDHICDEIAQNIEAQEQLLLQIQAQNDEFSAIFNLEDYKASREKAYKQIEAAIAKFREIKENINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQLAGLSFQDKNAGASFNSNYPSVGSQNQRASTQTDPRPQAPYYQPVEQPPVAPYGHHAPPPYGGPAHHQPPPPYHIPPSSTAPYPPPQVHQQPPGNHEYGQPAYPGWRGPYYNTQAQQPGSVPRPPYTIPSPYPPPHQSGYYKQQ 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03473 871 MobiDBLite consensus disorder prediction 768 818 - -
Vimu3g03473 871 CDD BRO1_Alix_like_1 16 371 - -
Vimu3g03473 871 Pfam BRO1-like domain 17 394 IPR004328 -
Vimu3g03473 871 Coils Coil 279 299 - -
Vimu3g03473 871 CDD V_Alix_like_1 377 713 - -
Vimu3g03473 871 MobiDBLite consensus disorder prediction 849 863 - -
Vimu3g03473 871 MobiDBLite consensus disorder prediction 742 871 - -
Vimu3g03473 871 Gene3D alix/aip1 like domains 423 704 - -
Vimu3g03473 871 Coils Coil 657 684 - -
Vimu3g03473 871 ProSiteProfiles BRO1 domain profile. 15 409 IPR004328 -
Vimu3g03473 871 PANTHER PCD6 INTERACTING PROTEIN-RELATED 16 862 - -
Vimu3g03473 871 Coils Coil 578 598 - -
Vimu3g03473 871 Coils Coil 39 59 - -
Vimu3g03473 871 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Vimu3g03473 871 MobiDBLite consensus disorder prediction 742 765 - -
Vimu3g03473 871 Coils Coil 627 647 - -
Vimu3g03473 871 Gene3D alix/aip1 like domains 11 376 IPR038499 -
Vimu3g03473 871 SMART BRO1_2 15 399 IPR004328 -
Vimu3g03473 871 Coils Coil 451 478 - -
Vimu3g03473 871 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03473 3 47651282 47659761 Vimu3g03473 3 47651282 47659761 ECH