Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03446 ATGTTCATGCTGGGTAGCATAAAACGTGCCACATCCCAATCAGTGTTGGGTTCTATGGCGCTTTTTCGATCATCCAAAAGGTTCGTCATCTCCAATCTCCTCCTTCCCCTCTCGGAATCTTCTTCAACATCCCTTAATCCTTCGTCAAGTTCAAATTTTCACCACCATTATCCCAAACCCACAATCCAATTTTCCTATGGGTCTCCAAAACAAACCACGTTGGCCTTCCACACGGCCCAACCTAGGTCCACATCCAACGCCGAAGCAATCTGCAGAATCTTATCCAACTCTCGCGACTCCACCGTCGCTGCCTCTCTCGCTGCTGTTGTGGTGAATCCCTCGCCGGAGCTCGTCCTCGAGGTCTTGAACAAACTCAGTAATGCCGGTACCCTGGCGCTTTCGTTCTTCCGTTGGGCCGAGAAACAAGGCGAGTTCAAACCCACCACAGAGATCTTTCACGCATTGATCGAAGCACTGGGTAAGATCAGACAGTTCAGATTGATTTGGACTTTGGTCGACGACATGAAGCAGCGAAAGTTGTTGACTTCTGACACTTTTGCCCTCGTTGCTCGCCGATACGTGCGAGCACGGAAGGTCAAGGAAGCAACCGAGACATTTGAGAAGATGGAGCGTTACGGTTTGAAGCCGCATGTATCGGATTTCAATAAGTTGATCGATGTGTTGTGTAAATCCAAGTGTGTTGAGAAGGCACATGAGATGTTTGATAAAATGCGGCAGTTAGGGTTGGACCCCGATATCAAGTCCTACACTATTTTGCTAGAAGGGTGGAGTCAGCTGCAGGACTTGATCAAACTCAATGAGTTGTGTAGGGAAATGGAGGATAAAGGGTTTCAGATTGATGTTGTTGCGTATGGGATAATCATCAATGCGTATTGCAAGGCTAAGAAATTTGATGAAACCATTAGGTTGTACCATGAGATGAAAGCTAAGGGTCTGAGGCCTAGTCCCCATGTGTATTGTACTTTGATTAACGGATTGGGTTCGGATAGGAGATTGAACCAAGCTCTTGAGTTTTTTGAGGCATCTAAGGCTAGTGGCTTTGCACCTGAGGCTCCCACCTTCAATGCTGTTGTTGGGGCTTATTGCTGGTCTTTGCGTATGGATGATGCGTATAGGATGGTTGGCGAGATGAAAAAGTGTGGGATCGGTCCAAATTCTCGAACTTTTGATATTATACTTCATCATCTTATAAAGGGTCGTAGGATTGAAGAGGCTTGCTCGGTTTTTCACAGAATGAGTGGCGAGTTTGGGTGTGAGCCGAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAATGAAGAAAGATTGGATATGGCGATGGCAGTTTGGGATGAGATGAAAGAGAAGGGAATTCTTCCTGGAATGCACATGTTCTCCACGTTGATCTGTTCCTTGTGCCATGAAAGTAAGTTGAATGAAGCGTGTAAGTACTTTCAAGAAATGTTAGATGTGGGTATTCGGCCTCCTGCCAAAATGTTCAGCACCTTGAAGGAAGCTCTAGTTGATGCGAGGATGGAGCATATTGCCATGCATTTTGCTTTGAAAATTGATAAACTCAGGAAGTCTCCATTGGTTGCTTGA 1608 0.4596 MFMLGSIKRATSQSVLGSMALFRSSKRFVISNLLLPLSESSSTSLNPSSSSNFHHHYPKPTIQFSYGSPKQTTLAFHTAQPRSTSNAEAICRILSNSRDSTVAASLAAVVVNPSPELVLEVLNKLSNAGTLALSFFRWAEKQGEFKPTTEIFHALIEALGKIRQFRLIWTLVDDMKQRKLLTSDTFALVARRYVRARKVKEATETFEKMERYGLKPHVSDFNKLIDVLCKSKCVEKAHEMFDKMRQLGLDPDIKSYTILLEGWSQLQDLIKLNELCREMEDKGFQIDVVAYGIIINAYCKAKKFDETIRLYHEMKAKGLRPSPHVYCTLINGLGSDRRLNQALEFFEASKASGFAPEAPTFNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIILHHLIKGRRIEEACSVFHRMSGEFGCEPSVSTYEIMVRMFCNEERLDMAMAVWDEMKEKGILPGMHMFSTLICSLCHESKLNEACKYFQEMLDVGIRPPAKMFSTLKEALVDARMEHIAMHFALKIDKLRKSPLVA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03446 535 Gene3D Tetratricopeptide repeat domain 219 326 IPR011990 GO:0005515
Vimu3g03446 535 Pfam PPR repeat 424 456 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Vimu3g03446 535 Pfam PPR repeat 191 214 IPR002885 -
Vimu3g03446 535 Pfam PPR repeat 466 495 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 185 216 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 431 462 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 395 429 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 289 322 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 325 356 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 360 392 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Vimu3g03446 535 NCBIfam pentatricopeptide repeat 466 497 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vimu3g03446 535 Gene3D Tetratricopeptide repeat domain 422 497 IPR011990 GO:0005515
Vimu3g03446 535 Gene3D Tetratricopeptide repeat domain 346 421 IPR011990 GO:0005515
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 427 IPR002885 -
Vimu3g03446 535 Pfam PPR repeat family 287 333 IPR002885 -
Vimu3g03446 535 Pfam PPR repeat family 360 404 IPR002885 -
Vimu3g03446 535 Pfam PPR repeat family 220 262 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Vimu3g03446 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vimu3g03446 535 Gene3D Tetratricopeptide repeat domain 86 218 IPR011990 GO:0005515
Vimu3g03446 535 PANTHER OS07G0661900 PROTEIN 111 282 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03446 145 513 Glycosyltransferase AT1G05670 26.486 9.02e-48 175
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03446 3 47491850 47493457 Vimu3g03446 3 47491850 47493457 ECH