Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03439 ATGACTAAAGAAGAAGACTTTAAGCTCCTTAAAATCCAGACCTGTGTTCTCAAAGTTAACATTCACTGTGATGGGTGTAAGCACAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTGTTTACCAAGTTCAAATAGATGCAGAACAGCAGAAAGTAACTGTTTCAGGTAGTGTGGATTCTGCAACCTTGATCAAGAAGCTGGTGAGAGCTGGTAAATATGCCGAGCTCTGGTCTCAGAAAACAAACCAGAACCAAAAGCAGAAGAACAACAACGCGAAGGATGACAAGAACAAAGGACAAAAGCAAGGCCTTGCCAAGGGGCTTGATGCCTTCAAGAACCAGCAAAAGTTTCCTGCTTTTAGTTCTGAAGAGGATGAATACTACTCTGAATATGAAGACGATGATGAGGAAGAAGATGAAGAAATGCGGTTTCTAAGGGAGAAAGCCCATCATCTGCAGATGCTCAAGCAGCAAGCAGCTAATGCAAATGTGAGGAAAAGTTTGGGGGGCATGGGAGCAGGTGCCATCAACGGTAAGATGAACAGTGGTGGTGGTGGCAATGGCGGTGGTGGTGGTGGCAAGAAAGGAGGCCCGAATCCGAATATGGGAATGAAGGAGAGTCCGAATGGGGGGCTTGATCAGAAAACAATGGCAGCCCTAAAATTGAACGGTGGTCATGTGGGTGGTGAAGGCCTCGGCCTCAATATTGGTGAAGCGAAAAGGGCCAATGACATTGGGGCCATGATGAATATGGCTGGTTTTAACGGCAACGGTGGCAATGTCACCAGTGCCACTGTTCTAGGAGCTAATAATTCTAGTGGCATGGGAGGTTTTCCTGTTCAGTCCAATAACATGATTCCAGGGTCCTCAGCAGGTTTTTCAAATGGAGGTATTGGTGCTGGGCAATACCCATCTTCTCTGTTAATGAACATGAATGGGTTCAACAATCATCCATCCCCATCGCCATTGATGATGAACATGAACATGAACATGCAGGCTAGACAAGCCATGCAACAACAGCCCCAGATGATGTATCACAGGTCTCCCTTGATTCCCCCTAACACTGGGTATTACTACAACCATAGTAATAGCTACAGCCCTGCACAATACTCCTATTCCTATGGCTTGCCTAGTTACCCTGGGGGTGATGATCACTCTGCGACTCACATGTTCAGTGATGACAACACCAGCAGCAGTTGTTCAATAATGTAA 1212 0.4587 MTKEEDFKLLKIQTCVLKVNIHCDGCKHKVKKLLQRIEGVYQVQIDAEQQKVTVSGSVDSATLIKKLVRAGKYAELWSQKTNQNQKQKNNNAKDDKNKGQKQGLAKGLDAFKNQQKFPAFSSEEDEYYSEYEDDDEEEDEEMRFLREKAHHLQMLKQQAANANVRKSLGGMGAGAINGKMNSGGGGNGGGGGGKKGGPNPNMGMKESPNGGLDQKTMAALKLNGGHVGGEGLGLNIGEAKRANDIGAMMNMAGFNGNGGNVTSATVLGANNSSGMGGFPVQSNNMIPGSSAGFSNGGIGAGQYPSSLLMNMNGFNNHPSPSPLMMNMNMNMQARQAMQQQPQMMYHRSPLIPPNTGYYYNHSNSYSPAQYSYSYGLPSYPGGDDHSATHMFSDDNTSSSCSIM 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03439 403 FunFam Copper transport protein ATOX1 11 80 - -
Vimu3g03439 403 SUPERFAMILY HMA, heavy metal-associated domain 12 78 IPR036163 GO:0046872
Vimu3g03439 403 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 6 403 - -
Vimu3g03439 403 Pfam Heavy-metal-associated domain 17 70 IPR006121 GO:0046872
Vimu3g03439 403 CDD HMA 16 75 IPR006121 GO:0046872
Vimu3g03439 403 Coils Coil 82 102 - -
Vimu3g03439 403 Coils Coil 128 148 - -
Vimu3g03439 403 ProSiteProfiles Heavy-metal-associated domain profile. 12 75 IPR006121 GO:0046872
Vimu3g03439 403 Gene3D - 12 84 - -
Vimu3g03439 403 MobiDBLite consensus disorder prediction 125 140 - -
Vimu3g03439 403 MobiDBLite consensus disorder prediction 81 140 - -
Vimu3g03439 403 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03439 Vimu-Chr3 47438628 47440548 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03439 3 47438628 47440548 Vimu3g03439 3 47438628 47440548 ECH