Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03432 ATGGCAATTCAGCAACAGAATCACCAACTACAACATAACGAGAATGTCTCATCTCTCCTTGATGCCCTTTACTGTGATGAAGCAAAGTGGGAAGATGAAGAGGAGGAGGAAGAAGAAGATGAAGAGAGTGATGTCACAACAAACAACGATGCATGTAACGGACCTTCTCTTTTCCCTCTGCTCTTCTTGGAGCAAGACTTCTTCTGGGAAGACCAGGAACTGAACTCTCTCTTTTCCAAAGAGAAGCTTCAGCATCAACAACTTTACGGCTATAACATTGATGCTAATAACAATAATGATGCTTGTGACAGTACTAGCAATAATGTGCATTTGGACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCTGTGGAATGGATGCTCAAAGTCAATGCTCATTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTCGTGGCTGTCACTTGCATCTCTTTGGCAGCAAAGGTTGAAGAAACTCAAGTGCCTCTTCTCTTAGACCTTCAAGTGCAGGACACTAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTTGTGCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATCATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGCGAGCACCTTCTCCTGTCTGTGCTTTTGGATTCGAGATTTGTTGGGTGCCTTCCTTCTGTTTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCTATTCTCCAACGCTCAAATCGCAATAGTTATGGTCATAACAACAACATTTACAAACGCAAGTATGAGCAAATTCCAGACAGCCCAAGCGGCGTAATTGATGCTGCATTTGGCTCTGATGGTTCCAATGATTCGTGGGCAGTGGGGTCATCACTATATTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAATCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTGA 1191 0.4442 MAIQQQNHQLQHNENVSSLLDALYCDEAKWEDEEEEEEEDEESDVTTNNDACNGPSLFPLLFLEQDFFWEDQELNSLFSKEKLQHQQLYGYNIDANNNNDACDSTSNNVHLDPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVDECYNAILQRSNRNSYGHNNNIYKRKYEQIPDSPSGVIDAAFGSDGSNDSWAVGSSLYSSPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03432 396 Pfam Cyclin, N-terminal domain 117 218 IPR006671 -
Vimu3g03432 396 MobiDBLite consensus disorder prediction 29 50 - -
Vimu3g03432 396 CDD CYCLIN_AtCycD-like_rpt1 119 216 - -
Vimu3g03432 396 Gene3D - 220 311 - -
Vimu3g03432 396 SUPERFAMILY Cyclin-like 116 219 IPR036915 -
Vimu3g03432 396 SMART cyclin_7 124 212 IPR013763 -
Vimu3g03432 396 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Vimu3g03432 396 SMART Cyclin_C_2 221 350 IPR004367 -
Vimu3g03432 396 FunFam D3-type cyclin 112 219 - -
Vimu3g03432 396 SUPERFAMILY Cyclin-like 222 332 IPR036915 -
Vimu3g03432 396 Gene3D - 117 219 - -
Vimu3g03432 396 PANTHER CYCLINS 50 320 IPR039361 -
Vimu3g03432 396 CDD CYCLIN_AtCycD-like_rpt2 221 311 - -
Vimu3g03432 396 Pfam Cyclin, C-terminal domain 221 332 IPR004367 -
Vimu3g03432 396 FunFam CYCLIN D32 220 309 - -
Vimu3g03432 396 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03432 Vimu-Chr3 47387701 47389574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03432 1 313 Core Cell Cycle Gene Families AT4G34160 54.633 1.04e-112 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03432 3 47387701 47389574 Vimu3g03432 3 47387701 47389574 ECH
Vimu10g03272 10 42975476 42976967 Vimu3g03432 3 47387701 47389574 ECH
Vimu1g02956 1 41940139 41941687 Vimu3g03432 3 47387701 47389574 ECH
Vimu7g02786 7 23432760 23434069 Vimu3g03432 3 47387701 47389574 PCT