Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02966 ATGGGTAAGAGCAAAAACTCTGATGATTTTTCTCTTCTCCTTCCCCTCCTCTTCTTCACTCTTGTCGGAACCTCTCATGCCGGCGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGCACCCTTTCCGAAGCATGTGCCACGGGAAGATACACTCACGTCAACATAGCTTTCCTCAACAAATTTGGCAATGGCCAAACCCCAGAAATGAACCTGGCTGGTCACTGCAATCCCGCCACCAATTCCTGCACAAAGTTCAGCGCTGAAATCAAGGACTGCCAAAGAAAAAACATCAAGGTGTTGCTTTCCATAGGTGGTGGCATTGGAAGCTACACTTTGGCTTCCGTTGAGGATGCAAGGAACGTTTCAACCTTCCTGTGGAACACTTTCTTGGGAGGCAAATCATCAACAAGACCACTAGGTGATGCTGTGTTAGACGGCATAGATTTCGACATAGAACAAGGCTCAACAGAAAACTACGAGCACCTTGCACGTTTCCTTAAAGCGTATAGTAGAAAAGGTAAAAGGGTATACCTAGGTGCTGCCCCTCAGTGTCCAATTCCCGATAGGTTTTTGGGCACTGCCCTAGACACCGGCCTATTTGACTTTGTTTGGGTTCAGTTCTACAACAACCCTCCATGTCAGTATGCTGATGGGAACGTAACCAACCTTCTGAATTCTTGGAACCGTTGGACTAGTACAGTACCGGCTGGGAAGATATTCTTAGGGTTGCCGGCGGCTCCGGCAGCCGCTGGCAGCGGTTTCATCCCGGCCGATGTGTTGACGTCTCAAATCCTGCCGGTGATTAAGGAGTCACCAAAATATGGTGGGGTGATGCTGTGGTCAAGATTCTTTGATGTCCAGAATGGGTATAGTACTTCAATTATTGGAAGCGTGTGA 903 0.4873 MGKSKNSDDFSLLLPLLFFTLVGTSHAGGIAIYWGQNGNEGTLSEACATGRYTHVNIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSAEIKDCQRKNIKVLLSIGGGIGSYTLASVEDARNVSTFLWNTFLGGKSSTRPLGDAVLDGIDFDIEQGSTENYEHLARFLKAYSRKGKRVYLGAAPQCPIPDRFLGTALDTGLFDFVWVQFYNNPPCQYADGNVTNLLNSWNRWTSTVPAGKIFLGLPAAPAAAGSGFIPADVLTSQILPVIKESPKYGGVMLWSRFFDVQNGYSTSIIGSV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02966 300 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 300 IPR001223 GO:0005975
Vimu3g02966 300 SUPERFAMILY (Trans)glycosidases 25 296 IPR017853 -
Vimu3g02966 300 PANTHER ENDOCHITINASE 16 296 - -
Vimu3g02966 300 Gene3D Glycosidases 28 299 - -
Vimu3g02966 300 FunFam Acidic endochitinase SE2 28 300 - -
Vimu3g02966 300 CDD GH18_hevamine_XipI_class_III 28 298 IPR045321 -
Vimu3g02966 300 Pfam Glycosyl hydrolases family 18 30 284 IPR001223 GO:0005975
Vimu3g02966 300 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02966 Vimu-Chr3 43757647 43759394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02966 28 300 Glycoside Hydrolase AT5G24090 67.399 2.15e-147 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00464 5 4569284 4570845 Vimu3g02966 3 43757647 43759394 ECH
Vimu3g02966 3 43757647 43759394 Vimu3g02966 3 43757647 43759394 ECH