Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02694 ATGGCTGAAACCAAGACACATATGGAGAGAGAGAGAGAGAGAAAGAGAAGGATAGAGTGTGTTCCAAGACACAATGATTACATGGTCTTGGGGAAGCATAAAGGGTGGCGTGGACATAGGAAGAGTATAGAAGAACGTGGGGGGCTTGACCGAGGAGGCAACAGCGGCTGTAGACTAGCTAGGGAAATGATACAGGAAGATCAAGGACAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCTTATCAAGACCAGCTTCTTCTTCAGCAACAGATGCAGCAACAAAACAATGATATCTTTGGTGGAGGAGGAAGAGGAGGGCTCAACATGTACCCTGGTGAAGTCTCTCAAATCATGCATCAGCCTTGGTCTATGACTCATAATCAGGTTCATCACCCCTTCAACACGGTGAGAGAGCACGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAACTTTGTTCAACCGAAGGGGTCATTCTCTTCAGTTTGCATATGATGGTTCATCTTCTGACCATCTTAGGATCATATCAGACACCCTTGGACCGGTCGTTCAACCCGGTTCGGCACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAGGAAATCATGGAGGCCAAGGCCCTTGCAGCATCCAAGAGTCACAGTGAAGCCGAAAGGAGGCGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCATTGATAGCAGAATCGAGTCCGGTTCCTACGGAGGCTGACGAGTTAACTGTGGTGGACGAAGCTGATGAAGATGGCAGGTCTGTGATCAAAGCATCTTTGTGCTGTGAAGATAGGTCAGATCTGTTTCCTGAACTCATCAGGACCTTGAAAGCATTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTGGGAGGACGTGTGAAGAACGTGTTGTTCATCACTGGGGAAGAAGAAGACTCAAGCAGCGGTAGCGAGGACCACAACCACCAACAGCAGTACTGCATTAACTCAATACAAGAAGCACTTAAGGCGGTAATGGAGAAGAGCGTGGGGGAGGAGTCTGCTTCGGCAAATATTAAGAGACAAAGGACCAATATAATATCAATGTCCTAG 1203 0.4805 MAETKTHMERERERKRRIECVPRHNDYMVLGKHKGWRGHRKSIEERGGLDRGGNSGCRLAREMIQEDQGQCSSQAINNYHQAYQDQLLLQQQMQQQNNDIFGGGGRGGLNMYPGEVSQIMHQPWSMTHNQVHHPFNTVREHDPFLVPPQPSPYATLFNRRGHSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGRSVIKASLCCEDRSDLFPELIRTLKALRLRTLKAEITTLGGRVKNVLFITGEEEDSSSGSEDHNHQQQYCINSIQEALKAVMEKSVGEESASANIKRQRTNIISMS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02694 400 SMART finulus 221 270 IPR011598 GO:0046983
Vimu3g02694 400 FunFam transcription factor bHLH30 210 273 - -
Vimu3g02694 400 CDD bHLH_AtAIG1_like 210 286 - -
Vimu3g02694 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Vimu3g02694 400 Pfam Helix-loop-helix DNA-binding domain 218 264 IPR011598 GO:0046983
Vimu3g02694 400 Gene3D - 210 271 IPR036638 GO:0046983
Vimu3g02694 400 CDD ACT_UUR-ACR-like 301 344 - -
Vimu3g02694 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 271 IPR036638 GO:0046983
Vimu3g02694 400 PANTHER TRANSCRIPTION FACTOR BHLH30 95 396 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02694 Vimu-Chr3 41116234 41121060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02694 153 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 68.872 2.35e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g02694 HLH 2.1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02694 3 41116234 41121060 Vimu3g02694 3 41116234 41121060 ECH