Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02686 AAACTTCCCTCCTCCAAATACAAAGGCGTGGTGCCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGTACCTTCAATGAGGAAGATGAAGCCGCCAGAGCCTACGATATCGCGGCGCAGAGGTTCCGCGGGCGCGACGCCGTCACAAACTTCAAGCCTCTTGCCGGAGCAGCCGACGACGCAGAGTCCGAGTTCCTTAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTGCGCAAACACACCTACGACGACGAGCTCCTGCAGAGCACACGCGGCGGCAGGCGACGCCGCGATGTCCAGGCCACCTCGAGCGGCGCGTACGATGTGAAGGCGCGTGAGCAGCTGTTCGAGAAAACAGTCACTCCCAGCGACGTCGGCAAGCTGAATAGATTGGTTATACCGAAGCAGCACGCGGAGAAGCACTTCCCGTTGAGCAGCGGATCCGGCAGCGGAGTCTCGCCGAGCACTGCTGCAGCGGCGGCGGCGGCCAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTTACCAAGGGATGGAGCCGGTTTGTGAAGGAGAATAATCTGAGAGCCGGTGACGCGGTTCGGTTTTTCAAGTCAACCGGACCGGACCGGCAGCTTTATATAGACTGCACGGCCAGGAGCGGTGGCGGTATTTGTGAGCTTAATAACAATAATGGTGGAGGTTTGTTTGTCCCGGTGGGACCAGTTGTAGAGCCGGTTCAGATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGTTCGGATGGTGTCCGGGTTGGCTATGAAGGGAAGCGGAAAGAGATGGAACTGTTTGCATTCGAATGTAGCAAGAAGTTAAAAGTAATTGGAGCTTTGTAA 948 0.5665 KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAADDAESEFLNSHSKSEIVDMLRKHTYDDELLQSTRGGRRRRDVQATSSGAYDVKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSSGSGSGVSPSTAAAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRAGDAVRFFKSTGPDRQLYIDCTARSGGGICELNNNNGGGLFVPVGPVVEPVQMVRLFGVNLLKLPGSDGVRVGYEGKRKEMELFAFECSKKLKVIGAL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02686 315 CDD AP2 5 60 IPR001471 GO:0003700|GO:0006355
Vimu3g02686 315 ProSiteProfiles AP2/ERF domain profile. 6 61 IPR001471 GO:0003700|GO:0006355
Vimu3g02686 315 Gene3D AP2/ERF domain 5 62 IPR036955 GO:0003700|GO:0006355
Vimu3g02686 315 SMART B3_2 126 242 IPR003340 GO:0003677
Vimu3g02686 315 SUPERFAMILY DNA-binding pseudobarrel domain 124 232 IPR015300 -
Vimu3g02686 315 ProSiteProfiles B3 DNA-binding domain profile. 126 242 IPR003340 GO:0003677
Vimu3g02686 315 Pfam B3 DNA binding domain 126 225 IPR003340 GO:0003677
Vimu3g02686 315 CDD B3_DNA 125 236 IPR003340 GO:0003677
Vimu3g02686 315 Pfam AP2 domain 5 53 IPR001471 GO:0003700|GO:0006355
Vimu3g02686 315 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vimu3g02686 315 PRINTS Ethylene responsive element binding protein signature 27 43 IPR001471 GO:0003700|GO:0006355
Vimu3g02686 315 Gene3D - 114 245 IPR015300 -
Vimu3g02686 315 SUPERFAMILY DNA-binding domain 5 61 IPR016177 GO:0003677
Vimu3g02686 315 SMART rav1_2 6 67 IPR001471 GO:0003700|GO:0006355
Vimu3g02686 315 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 289 IPR044800 GO:0003700
Vimu3g02686 315 FunFam AP2 domain-containing protein RAP2.8 5 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02686 Vimu-Chr3 41012797 41014464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02686 1 315 B3 DNA Binding Superfamily AT1G25560 60.736 3.23e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Vimu3g02686 B3 2.2e-26 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02686 3 41012797 41014464 Vimu3g02686 3 41012797 41014464 ECH