Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02643 ATGGCACTCTCGCGCCTTCGCCACCCTCTCTTCTCTCGCTCCCTTCGCATCCTCTCTTCTTCCTCCAGATCCCTCTCTCGAACTTCTAATTCAACGATTTTTTCCGCGGCAGCTCAATCGAGTATAAGGTTGGCCAGTCATTCTCTCCGGCACGTGGGAGGTGGGATTGACATTCTCTTTGTTAGACATGGCATACATATGGCACATCAATCTGTCTTCTTGTATTTTAATTTAATTTATCATTGTGGTTTACTGATGGTGATGTTTATCAGACCCACATCTTGCTCCGGGATTACTGGAATTAATGATAGGTCTTTGAAGTCAAAGTGGACTGATGTCAAATACTTTTCATCTTCAGAATCTTCATACGAAGTCCTTGGGATGCCAGCTTTATCTCCTACAATGACGCAAGGTAATATTGCAAAATGGAGGAAGAAAGAAGGAGAAAAGATAGAAGTGGGGGATGTACTATGTGAAATTGAAACTGACAAAGCTACACTAGAATTTGAAAGTCTTGAAGAGGGATTTCTGGCTAAGATATTGGTACCTGAAGGTTCAAAGGATGTGCCTGTTGGACAACCAATTGCTATAACAGTTGAGGATGAAAAGGACATCCAAAATGTTCCTGCTTCTGTGGGGGGTCAGGTTGAAGAGACGAAACCAGCACAGCAGGATGTTACAGATGAGAAGAAACCAGAATCAACTTCGACTATGATTAATGCATCAGAACTTCCTCCTCATGCCCTTCTTGAAATGCCAGCTTTGTCTCCGACAATGAACCAAGGGAACATTGCTAAATGGAGAAAACAAGAAGGAGACAAGATTGAAGTGGGTGATATATTGTGTGAGATAGAGACAGACAAAGCTACACTGGAATTTGAAACTCTTGAAGAGGGGTACCTGGCTAAGATACTTGCTCCAGAAGGTTCAAAAGAAGTTGCAGTTGGGCACCCTATTGCAATAACAGTTGAAGATGCAAGTGACATTGAAGCTATAAAGAATTCTGTTAACAGCAGTTCAACAAACCAACAGAAGGCCCCCCAACATGACACTAAAAGTGAGGTCAAAGCTCGAAAAACCAAAATAGCACGAATCAGCCCAGCAGCGAAGTTGCTAATTGCAGAGTATGGATTGGATGCATCAACATTGAATGCAACTGGTCCTTACGGCACCCTACTGAAAGGGGATGTTCTTTCTGAAATTAAGTCAGGAAAATTGTCTCCTAAACCTGCTTCACCTAAAGAAAAGGTGCTGTCATCCCAAAGTCATCAACAAGTGGCAGCTTCTCGAGAATCAAAGTCTAACTTAGGGCAGTCGGATTCTTATGAAGATTTTCCTAATAGTCAAATTCGCAAGGTGATTGCCAAGAGGTTATTGGAATCAAAACAAAATACACCGCACTTATATTTATCATCAGATGTTATACTGGATCCTCTTCTTTCCCTTCGGAAGGATCTTAAAGAGCAGTATGATGTTAAAGTTTCTGTGAATGACATTATTATCAAAGTTGTAGCTGCTGCTCTTAGAAATGTACCTGAAGCAAATGCATACTGGAATGTTGAGAAGGGCGAGGTCGTTTTAAATGATTCTGTTGATATATCAATAGCAGTTGCCACGGATAAGGGCTTGATGACTCCAATAATAGAAAACGCTGATCAGAAGACTATCTCTGCTATCTCCTCAGAGGTCAAGGAACTAGCTGCAAAGGCACGTGATGGCAAGTTGAAGCCACAGGAATTCCAAGGGGGGACGTTTAGCATTTCAAACTTAGGAATGTTTCCGGTGGATAAATTTTGTGCTATTATAAATCCCCCTCAGGCCTGCATTCTTGCTGTTGGGAGAGGCAACAAAGTTGTGGAACCAGTACTTGGAGATGATGGAGTTGAGAAGCCATCGATTGCCACTAAGTTGAACTTAACGTTGTCTGCTGATCATCGTGTTTTTGATGGCAAGGTTGGAGTCATTTGGATGAATAAATATTCTTTTCGTGTGCTGCATCTGTCATCCGACTTAAGTGATGACATGATTTGGCACAACGGCACACTGCTGATTCCTCCTCAGCCCTTTTCATCTTTAGTTTTTGTGCCAGGATTTGGCCTAGTGGTTGGTTCAATAATGGGAAATTCGGCTAAATCTCCCCGTCTAACTTAA 2151 0.4212 MALSRLRHPLFSRSLRILSSSSRSLSRTSNSTIFSAAAQSSIRLASHSLRHVGGGIDILFVRHGIHMAHQSVFLYFNLIYHCGLLMVMFIRPTSCSGITGINDRSLKSKWTDVKYFSSSESSYEVLGMPALSPTMTQGNIAKWRKKEGEKIEVGDVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDEKDIQNVPASVGGQVEETKPAQQDVTDEKKPESTSTMINASELPPHALLEMPALSPTMNQGNIAKWRKQEGDKIEVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGHPIAITVEDASDIEAIKNSVNSSSTNQQKAPQHDTKSEVKARKTKIARISPAAKLLIAEYGLDASTLNATGPYGTLLKGDVLSEIKSGKLSPKPASPKEKVLSSQSHQQVAASRESKSNLGQSDSYEDFPNSQIRKVIAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPEANAYWNVEKGEVVLNDSVDISIAVATDKGLMTPIIENADQKTISAISSEVKELAAKARDGKLKPQEFQGGTFSISNLGMFPVDKFCAIINPPQACILAVGRGNKVVEPVLGDDGVEKPSIATKLNLTLSADHRVFDGKVGVIWMNKYSFRVLHLSSDLSDDMIWHNGTLLIPPQPFSSLVFVPGFGLVVGSIMGNSAKSPRLT 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02643 716 CDD lipoyl_domain 252 321 - -
Vimu3g02643 716 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 119 223 - -
Vimu3g02643 716 Gene3D - 426 670 IPR023213 -
Vimu3g02643 716 MobiDBLite consensus disorder prediction 213 237 - -
Vimu3g02643 716 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 442 660 IPR001078 GO:0016746
Vimu3g02643 716 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 364 401 IPR004167 GO:0016746
Vimu3g02643 716 ProSiteProfiles Biotinyl/lipoyl domain profile. 247 323 IPR000089 -
Vimu3g02643 716 Pfam Biotin-requiring enzyme 250 321 IPR000089 -
Vimu3g02643 716 Pfam Biotin-requiring enzyme 126 197 IPR000089 -
Vimu3g02643 716 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 148 177 IPR003016 -
Vimu3g02643 716 Pfam e3 binding domain 364 398 IPR004167 GO:0016746
Vimu3g02643 716 SUPERFAMILY Single hybrid motif 126 215 IPR011053 -
Vimu3g02643 716 ProSiteProfiles Biotinyl/lipoyl domain profile. 123 199 IPR000089 -
Vimu3g02643 716 SUPERFAMILY CoA-dependent acyltransferases 436 659 - -
Vimu3g02643 716 SUPERFAMILY Single hybrid motif 250 340 IPR011053 -
Vimu3g02643 716 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 359 402 IPR036625 GO:0016746
Vimu3g02643 716 MobiDBLite consensus disorder prediction 414 444 - -
Vimu3g02643 716 Gene3D - 117 223 - -
Vimu3g02643 716 Gene3D - 245 348 - -
Vimu3g02643 716 MobiDBLite consensus disorder prediction 404 444 - -
Vimu3g02643 716 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 427 666 - -
Vimu3g02643 716 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 244 660 IPR045257 GO:0006086|GO:0045254
Vimu3g02643 716 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 243 347 - -
Vimu3g02643 716 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 272 301 IPR003016 -
Vimu3g02643 716 MobiDBLite consensus disorder prediction 335 359 - -
Vimu3g02643 716 CDD lipoyl_domain 128 197 - -
Vimu3g02643 716 Gene3D - 364 405 IPR036625 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02643 Vimu-Chr3 40661433 40678540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02643 240 660 Acyl Lipid Metabolism Gene Families AT3G13930 41.834 1.18e-104 328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02643 3 40661433 40678540 Vimu3g02643 3 40661433 40678540 ECH