Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02410 ATGGATGTGGAGGAAACTGAGGAGTTTGTGTCTTTGGACACAGATTTGTTGCAGCTTCAGGAGGTGTCTCCTTTTGCACTGAAATCGAGTCATTGTGTTGTTGAGGAGCTATTCACGCAGTGGCTTTCGCTTCCGGATACTTGTCGCCTGGTTAAGTCATTGCTTGCTGATGCTAAGGCAGGAGCTGCTTCGAGTGCACTGGAGAACTCAACGAGCACAAATTCTCTGTCAAACAACTCTCTACCTTCCTTGTTTCCTGCCGGGAGCACACCACCGCTTTCTCCACGTAGTTCATCTGGTTCCCCACGCACCACAAAACAGAGGAATAGTCCTTCATTAGGATCTCCACTAAAACTAGTCAGTGAACCTGTAAGGGAGGTCATTCCACAGTTCTACTTCAAAAATGGTCGTCCACCACCAAATGAGATGAAAGAGCATTTCCTGTATCAAATTGAAAGTCGGTTTTATGGCCATGTGAATGGTCTGCAATTACATGAATTTAAGTCTGTTGCAAAAGAGCTCTGCAAACTTCCCTCATTTTTCTCCACTGCTCTTTTCAGAAAGATTGATGTCAATTTTACTGGAACCATAACAAGGGATCAATTTATAGACTATTGGATTCGGGGCAATATGTTAGCTATGGATTTAACCACACAAATATATACCATACTGAAGCAACCATATCGAACATACCTTGCACAGGATGATTTCAAACCTGTCCTGAGGGAACTATTGTCCACTCATCCTGGATTGGAGTTTTTGCAAAGCACGCCTGAATTTCAGGAAAGATATGCTGAGACTGTCATACATAGAATATTTTACTACATGAATAGATCAGGAAATGGCCGACTTACACTGAGAGAATTGAAACGTGGGAACCTAGTTGATGCAATGCTTCATGTAGACGAGGAAGAGGACATTAACAAAGTGCTGAGGTACTTCTCATATGAGCACTTTTATGTCATTTACTGCAAGTTTTGGGAGCTCGACACAGATCATGACTTTTTCATTGATAGAGAGAATCTTATTAAATATGGGAACCATTCTCTTACCTATCGGATTGTTGATAGAATTTTTTCCCAGGTTCCAAGGAAATTTACCAGTAAAGTTGAGGGGAAGATGAACTACGAAGATTTTGTTTATTTTATACTTGCGGAGGAAGATAAGTCATCTGAACCTAGTCTAGAATACTGGTTCAAATGCATTGATTTGGATGGAAATGGAGTGCTGACACCAAATGAAATGCAGTTCTTTTATGAGGAGCAGTTGCATCGGATGGAGTGCATGGCCCAAGAGCCCGTGCTTTTTGAAGATATATTGTGTCAGATTGTAGATATGATTGGACCAGAGAATGAGGGATATATCACATTACGAGATGTTAAAGGAAGCAAACTTTCTGGAAATGTTTTCAACATTCTTTTCAATCTCAACAAATTTATTGCTTTCGAAACTCGTGATCCGTTTCTCATACGGCAGGAACGTGAGGATCCAAATTTGACTGAATGGGATCGTTTTGCACATAGAGAGTATATTAGGCTTTCCATGGAAGAAGATGGTGAAGATATGTCAAATGCCAGTGGAGATGTCTGGGAAGAATCACTTGAAGCCCCTTTCTGA 1617 0.4106 MDVEETEEFVSLDTDLLQLQEVSPFALKSSHCVVEELFTQWLSLPDTCRLVKSLLADAKAGAASSALENSTSTNSLSNNSLPSLFPAGSTPPLSPRSSSGSPRTTKQRNSPSLGSPLKLVSEPVREVIPQFYFKNGRPPPNEMKEHFLYQIESRFYGHVNGLQLHEFKSVAKELCKLPSFFSTALFRKIDVNFTGTITRDQFIDYWIRGNMLAMDLTTQIYTILKQPYRTYLAQDDFKPVLRELLSTHPGLEFLQSTPEFQERYAETVIHRIFYYMNRSGNGRLTLRELKRGNLVDAMLHVDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDRENLIKYGNHSLTYRIVDRIFSQVPRKFTSKVEGKMNYEDFVYFILAEEDKSSEPSLEYWFKCIDLDGNGVLTPNEMQFFYEEQLHRMECMAQEPVLFEDILCQIVDMIGPENEGYITLRDVKGSKLSGNVFNILFNLNKFIAFETRDPFLIRQEREDPNLTEWDRFAHREYIRLSMEEDGEDMSNASGDVWEESLEAPF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02410 538 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Vimu3g02410 538 PANTHER PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED 18 524 - -
Vimu3g02410 538 MobiDBLite consensus disorder prediction 518 538 - -
Vimu3g02410 538 Gene3D - 314 485 - -
Vimu3g02410 538 MobiDBLite consensus disorder prediction 65 116 - -
Vimu3g02410 538 FunFam Phosphoprotein phosphatase 2A regulatory subunit 206 317 - -
Vimu3g02410 538 SUPERFAMILY EF-hand 161 292 IPR011992 -
Vimu3g02410 538 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Vimu3g02410 538 Pfam EF-hand domain pair 319 419 IPR002048 GO:0005509
Vimu3g02410 538 MobiDBLite consensus disorder prediction 65 117 - -
Vimu3g02410 538 Pfam EF-hand domain 217 304 IPR041534 -
Vimu3g02410 538 Gene3D - 124 225 - -
Vimu3g02410 538 FunFam serine/threonine protein phosphatase 2A regulatory subunit B''beta-like 314 485 - -
Vimu3g02410 538 FunFam Serine/threonine protein phosphatase 2A regulatory subunit B''alpha 124 225 - -
Vimu3g02410 538 CDD PPP2R3A_B-like 206 479 - -
Vimu3g02410 538 Gene3D - 226 313 - -
Vimu3g02410 538 SUPERFAMILY EF-hand 303 459 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02410 Vimu-Chr3 38653327 38667567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02410 8 538 EF-hand Containing Proteins AT5G28900 74.624 0.0 838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02410 3 38653327 38667567 Vimu3g02410 3 38653327 38667567 ECH