Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02318 ATGCAAAATGTTCCACGTGACCGCCATGACGTCACCGGAGCCACTTATGATGTCATCACGGCGCCGCCGTTAGGACAACCGTGGCCGGTGGCGACCACCACACACCACGACCAAGGTTTGAATTTGGAACCAGTGTCTGTGCGACGCGTGGATGAGAGAGGGTTTAAGGAAACGAGTGAATGCTTCACTTCACTGCACATACCTTCATCTTCATCTTCATCTTCATCCAATTCCATGGAGTGCCCTCAGGAGATGGTGGTGAAACCAATGGAAGATATAGCAGCTAGAAATACATGTCCGAAGGTTGAAGGTGCTGTGGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTATAGCCTCACACAGCCTCGCTATTTCTGCAAAACTTGTAGAAGGTATTGGACAGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCCAGGAAGAACAAGAGATCTTCTACTTTTTCTTCCACACCTCACAATAATTCACCAGATAATAAGAAGCTTCCTGATCTGGTAATCGCACCACACTCTCAAAACCCTAAGAATAACATTCATCAAGGTCAAGATCTCAATCTGGGTTTCCCAGCCACGACCCCAGATTTCCGAAACATCTCTGAATTGGTTCAGCAAAACAACAACAATAGTAGCAACAACAACATGTCTGCTTCGGCTTCTTCTTCTTCTTCAACTACCTCTACCACCACTCCTACAACTTCACACCTTTCTGCATTGGAGCTTCTCACTGGGATCACTTCAACTTCCACCGGCTTCACTTCTTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATCCTTCCTACGCATGTGGATTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTAGATCACGGGTTTCCACTACTACCACAATGGATCAGAAGCAGCAAGGAAATTCAACAGGGTATTGGACTGGAATGTTTGGCGGAGGATCATGGGTCGATTCTTACATGGCTTTCTTTTCCTCTCGTGTCGATTTCTGGTGTATCTTGCTCATCTTCTGTTCAAGACCAAGCTCGATGGGATCTTGAAATGAAGCTTATTTTAGCCAGGCTTCAGTACTACTGGGAAAAGTAA 1167 0.4602 MQNVPRDRHDVTGATYDVITAPPLGQPWPVATTTHHDQGLNLEPVSVRRVDERGFKETSECFTSLHIPSSSSSSSSNSMECPQEMVVKPMEDIAARNTCPKVEGAVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTFSSTPHNNSPDNKKLPDLVIAPHSQNPKNNIHQGQDLNLGFPATTPDFRNISELVQQNNNNSSNNNMSASASSSSSTTSTTTPTTSHLSALELLTGITSTSTGFTSFMPVPVPADPNPSYACGFPLQDFKPTLNFSLDHGFPLLPQWIRSSKEIQQGIGLECLAEDHGSILTWLSFPLVSISGVSCSSSVQDQARWDLEMKLILARLQYYWEK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02318 388 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Vimu3g02318 388 MobiDBLite consensus disorder prediction 232 262 - -
Vimu3g02318 388 Pfam Dof domain, zinc finger 116 172 IPR003851 GO:0003677|GO:0006355
Vimu3g02318 388 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Vimu3g02318 388 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 103 249 IPR045174 GO:0003700|GO:0006355
Vimu3g02318 388 MobiDBLite consensus disorder prediction 167 186 - -
Vimu3g02318 388 MobiDBLite consensus disorder prediction 159 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02318 Vimu-Chr3 37742188 37755564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02318 77 314 C2C2-Dof Transcription Factor Family AT4G24060 45.018 9.14e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu3g02318 zf-Dof 5.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02318 - - pvu:PHAVU_001G080800g 360.533