Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00384 ATGTGCTCTTTGACTGTTTCTAGTTTCCATTGGTTGTCGGTTGATCAACTACTGAATACCAGAAGAAAAGTGGTAAACTTGTGGAAGCGAATTCCATTGTTTGAGAGGAAGCCGCTCTCAAGAATCATGTCCCTTTTAATGTTATTTTCTGGTATAAGGAATGCTCTGACAGATGATGAATTAGGCCTGGAAATACTGCATATTGCACTCCCTACAACTCTGGCTTTGGCAGCAGATCCTATTGCTTCTCTAATTGATACTGCATTCATCGGCCATATAGGCCCTGTGGAGCTTGCTGCTGTGGGAGTCTCCATTGCTATTTTCAATCAAATCTCAAAAATTACAATAATTCCACTTGTCAGTGTTACAACCTCTCTGGTTGCTGAGGAAGATGCTGCTGAACAAAATCATCAGTCAGAAAAAGCAATTCTGCTAGAGGAATCTAATGTAAATGTAAAGGTGGATATAGAAGACAAAACTGGCAACACTTTTTCAATAAATGCTGATAAAAAGGCTGCAGTTGGCCGTGGCAAAGCCTATATTCCATCAGCATCATCAGGAATAGTTATTGGCGGTGTTCTTGGGGTCCTACAAACTCTCTTTCTCATTTTTACAGCTAAACCGATGTTGAATTACATGGGCGTTGATTCTAATTCTCCTATGTTCAAACCAGCACAGCAATACTTGACACTGAGATCATTCGGTGCACCAGCAGTTATTATTTCTATGGCAATTCAAGGAGTTTTTCGTGGAATCAGAGATACAAAAACTCCTTTGTATGCTACAGTAATGGGAGATGCAACAAATATCCTTTTAGATCCATTGCTTATGTTCGTAGTGCGGTTGGGAGTCAGTGGGGCAGCCATTGCCCACATTTTCTCGCAGTACTTGATAGCCATAATGCTATTGTGGAGTTTGATGAAACAAGTTGTTCTTCTGCCTCCGACAATGAAAGACTTTCAATTTGGGAAGATTCTGAAAAATGGGTTTCTTTTGTTGGTTAAAGTTGGAGCTGTGACTTTCTGTGTGACCTTGTCTGCATCCCTAGCAGCAAGGAAAGGATCAACAACTATGGCTGCATTTCAAATCTGCTTACAAATTTGGATGGCAACATCTTTGCTTGCTGATGGATTGGCTGTTGCTGGACAAGCTATTATTGCAAGTGAATTTGCTAAAAAGGATTACAAAAAGGTTATCGAATCTGCCTCACGTGTGCTGCAGCTTGGCTTGATTCTTGGGCTGGTGCTCTCAGTCCTTCTTATGAGTCTACTGCCCTTTGGTTCTAAGTTATTTACAAATGACAGAAGTGTTCTTCAACTTATCAGTATTGGCATTCCATATGTTGCTGCCACTCAACCCATCAATGCTTTGGCATTTGTTTTTGATGGAATCAACTATGGGGCATCAGATTTCACATACTCCGCTTACTCAATGATTATGGTGGCGTTGGTGAGCATATGTAGTTTATATGTGCTGTTCTCAAGCTTTGGTTTCACTGGTATCTGGATTGCGTTGTCTATTTACATGGCTCTAAGGATATTTGCAGGGTTTTGGAGGATTGGTACTGCATCAGGACCTTGGAGCTTCCTTACTGAAAACTCTAATTTGTTCCAGTAG 1617 0.4088 MCSLTVSSFHWLSVDQLLNTRRKVVNLWKRIPLFERKPLSRIMSLLMLFSGIRNALTDDELGLEILHIALPTTLALAADPIASLIDTAFIGHIGPVELAAVGVSIAIFNQISKITIIPLVSVTTSLVAEEDAAEQNHQSEKAILLEESNVNVKVDIEDKTGNTFSINADKKAAVGRGKAYIPSASSGIVIGGVLGVLQTLFLIFTAKPMLNYMGVDSNSPMFKPAQQYLTLRSFGAPAVIISMAIQGVFRGIRDTKTPLYATVMGDATNILLDPLLMFVVRLGVSGAAIAHIFSQYLIAIMLLWSLMKQVVLLPPTMKDFQFGKILKNGFLLLVKVGAVTFCVTLSASLAARKGSTTMAAFQICLQIWMATSLLADGLAVAGQAIIASEFAKKDYKKVIESASRVLQLGLILGLVLSVLLMSLLPFGSKLFTNDRSVLQLISIGIPYVAATQPINALAFVFDGINYGASDFTYSAYSMIMVALVSICSLYVLFSSFGFTGIWIALSIYMALRIFAGFWRIGTASGPWSFLTENSNLFQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00384 538 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 48 532 IPR044644 -
Vimu3g00384 538 Pfam MatE 338 490 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g00384 538 Pfam MatE 184 275 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g00384 538 NCBIfam MATE family efflux transporter 71 502 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu3g00384 538 CDD MATE_DinF_like 64 522 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00384 Vimu-Chr3 3657960 3663507 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00384 3 3657960 3663507 Vimu3g00384 3 3657960 3663507 ECH
Vimu3g00384 3 3657960 3663507 Vimu4g00471 4 3399378 3404250 ECH