Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00194 ATGTGTCTGCGACCACAGCACAACTTCAGTAGTAACATCAAGGTTTTTGTGATGATGGAGAGTGGATGGAAGGCTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCGAATACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTTCGGAATGTGCCTGTTGGTGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCATCTTGTGGGAATGCCACAGATCATAATAATAACCCTGTTGGGCATTCTTATGATCCCAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCCTCAGGGGTGAGTGATGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAACCCCAGTTCTGAATCTGGGATTGAGAGCAGTAATCCAGATCAAGTTCGAACAGCTTTTGATCCTTCTCTGGAGAATAATTCAAGGCTATCAAACACAGATGTTTCTGATCCTAGTACTTTGCCTGAAGAAATTTCTCTTACTGGGTGTTTGAATCTTCCAGAACAACCATCCACACATTCTGCTGAGGCTAATAATGGTGGCCAAATATGCTATGGTGAGTTCAACACTATGCAGACTATTCAAAAGGATGAAATTCAGCAGTGTAGTAGTCATGGTGGTGCTGTGAATTTTGAGCTGCCGCCATTACCTGGTGAAGTGGAAGCCTCACACGATCATCATCATCATCATATGATGTGGTCATCAAATTCTGAGATGATGACATTTCAAGCCACACAACCACCACTTCTTGGACCTGAAGTTCATGATGCAGACTTGCTAATAGGTAATTGGAGTCCCTTTGATTTGCCTTGA 942 0.4278 MCLRPQHNFSSNIKVFVMMESGWKAEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKTSSSSCGNATDHNNNPVGHSYDPRIRTSAASSSSSGVSDGPNIDLALVYANFLNQNPSSESGIESSNPDQVRTAFDPSLENNSRLSNTDVSDPSTLPEEISLTGCLNLPEQPSTHSAEANNGGQICYGEFNTMQTIQKDEIQQCSSHGGAVNFELPPLPGEVEASHDHHHHHMMWSSNSEMMTFQATQPPLLGPEVHDADLLIGNWSPFDLP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00194 313 Pfam Dof domain, zinc finger 32 85 IPR003851 GO:0003677|GO:0006355
Vimu3g00194 313 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Vimu3g00194 313 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Vimu3g00194 313 MobiDBLite consensus disorder prediction 103 139 - -
Vimu3g00194 313 MobiDBLite consensus disorder prediction 159 196 - -
Vimu3g00194 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 212 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00194 Vimu-Chr3 1651218 1652159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00194 25 312 C2C2-Dof Transcription Factor Family AT3G52440 39.344 7.15e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu3g00194 zf-Dof 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00194 - - gmx:100794208 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00194 3 1651218 1652159 Vimu3g00194 3 1651218 1652159 ECH
Vimu6g02252 6 19665884 19666660 Vimu3g00194 3 1651218 1652159 PCT