Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g02442 TTGCACATAGCAATACTAAAAGGAGATTGGCAATCTACAAAGGCTTTTCTTGACAATGACCCAAGTGCATGGACTGCAAAGATCACAATACTCGGTAGGACTGCGCTGCATGTTGCAGCTGTAGGAGGGCAGTGGCAAATTGTTGAGAAGTTGGTGCAACATGTTCCTACAAAAGTGCTTGAAGAGTTGGACTTGATGGGTTGTACTTGCCTGCACTATGTTGCAATGGGGGAAAGCAGAAGTGCTGCCAAGGCATTGGTCAGTAAAAATCCTTCTCTGACACAATTCACTGACTTCAAAGGATTCACACCACTTATCTACAGTATTACCTCTGCTAAATGCAAAGAAATGGTATGGTACTTTGTTTTGAATACGACAGATGAGAGACCTGGTTGTCCTTTCTCTGGTCCTTCTGCTGCTCAACTTGTTGCTTTGCTTACTGCTGCAGGATTTCATGATGTCACTATATATCTTCTTCAGCGCTACCCAGATTTGGCTACTCTCTCAGATTCAAAGGGAAGCATTATACTTAATGTTTTGTCAAAATTGCCTTCGGACTTTCAAAGTGGAAATAAACTTGGGTTTTGGAAAAGATGCATTTACCAATGTATGCCAGATGAACTTGATTTTTTACCACCAAGTCATCTGAGAGGAAATTCGAAAGATTCATTTGGGAATTCAAGCCATTACCAATCCTATTTTGGAAGTACAATATGGGATGTAATTCAGAGTATTGTTCCTGGCATAAAGCTAGTGAGAGAGGCAAAGTTGAGACACGCATCTGCTGCGAGATTGGTGGAACTGGTTTGCAGACAGGCTTCAAATTTGAATGACACCGAATTCTGGCAGTCTTTTGTGAGTGCAGATGTTGTTTTCAATGCCTCATCATCTGGCATAGTTGAAATTTTAAGGATCAGTTTCCAGTTTTTTCCTGATTTGGTTTGGTGTCACTTGCCAAATGAAGGATATGTAGCTCAAACTGCCATCAAGTATCGGCAAGAGAAGGTTTTTAGTCTTGTATGCAATATGCCTATAATTTGCAAGTTCTTAATCCTGGCATTAGATGAATCACAAAACACCACATCACATCTAGCAGCAAGGTTTGCTTCTCCTCAACAGGCATCAATTTCTGGTGCAGCTTTTCAAATGCAAAAAGAGTTGCAGTGGTTTAAGAAAGTGGAGCAATGGGATCACCCTCTTCATAAAGAAGTTAAAAACATAGATGGTAAAACACCTTGGCAATTGTTCAGGGAAGAGCATAAGCCTTTGCTTGAAGAAGCAAAGGTTTGGATGAAGGATACATCAAACTCTTGTATGTTGGTGGCAACTCTTATTGCCACAGTTGTCTTTGCTGCTTCTATAACTGTACCTGGAGGAAACAACCAAGACAAAGGATTTCCATTATTCTTGTCAGATAACACATTCATGGTGTTCGTTGTGTCAGATACATTAGCTTTGTTTTCCTCCATGGTTTCCCTTTTGATGTTTTTATCAATTCTAACTGCACATTATGCAGAAGAAGATTTTCTCAAGAGATTACCTGAGAGAATAATATTGGGTCTGGCTTCTTTGTTCTTTTCCATAGTTACTACAATGATAGCATTTGGTGCAGCCCTGGATTTGTTGCTAAGGGAGAGAGTGAAATGGGTGTCGATCCCAATTACTCTTCTGGCATGTGTCCCAGTTGCTCTATTTGCAGGGCTTCAACTTCCCTTGTTCATACAAATGATCATATCAACCTATGGTTCTTCTATATATCATCGTCAAAGTCTTTGGTAA 1779 0.4019 MHIAILKGDWQSTKAFLDNDPSAWTAKITILGRTALHVAAVGGQWQIVEKLVQHVPTKVLEELDLMGCTCLHYVAMGESRSAAKALVSKNPSLTQFTDFKGFTPLIYSITSAKCKEMVWYFVLNTTDERPGCPFSGPSAAQLVALLTAAGFHDVTIYLLQRYPDLATLSDSKGSIILNVLSKLPSDFQSGNKLGFWKRCIYQCMPDELDFLPPSHLRGNSKDSFGNSSHYQSYFGSTIWDVIQSIVPGIKLVREAKLRHASAARLVELVCRQASNLNDTEFWQSFVSADVVFNASSSGIVEILRISFQFFPDLVWCHLPNEGYVAQTAIKYRQEKVFSLVCNMPIICKFLILALDESQNTTSHLAARFASPQQASISGAAFQMQKELQWFKKVEQWDHPLHKEVKNIDGKTPWQLFREEHKPLLEEAKVWMKDTSNSCMLVATLIATVVFAASITVPGGNNQDKGFPLFLSDNTFMVFVVSDTLALFSSMVSLLMFLSILTAHYAEEDFLKRLPERIILGLASLFFSIVTTMIAFGAALDLLLRERVKWVSIPITLLACVPVALFAGLQLPLFIQMIISTYGSSIYHRQSLW 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g02442 592 ProSiteProfiles Ankyrin repeat profile. 31 54 IPR002110 GO:0005515
Vimu2g02442 592 Pfam Domain of unknown function 430 539 IPR026961 -
Vimu2g02442 592 Gene3D - 1 183 IPR036770 -
Vimu2g02442 592 ProSiteProfiles Ankyrin repeat region circular profile. 31 54 - -
Vimu2g02442 592 PANTHER CASKIN 29 582 - -
Vimu2g02442 592 SMART ANK_2a 66 95 IPR002110 GO:0005515
Vimu2g02442 592 SMART ANK_2a 31 60 IPR002110 GO:0005515
Vimu2g02442 592 SUPERFAMILY Ankyrin repeat 2 181 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g02442 Vimu-Chr2 20204588 20207625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g02442 386 567 Miscellaneous Gene Families AT3G12360 27.717 2.62e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02442 2 20204588 20207625 Vimu2g02442 2 20204588 20207625 ECH