Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01522 ATGGAAGAAATAGGTCCCAATTCATGCGCAAGGCCATCATTGTTAGAGAAGAAAGCAAAACCACAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACGAACACTAAGTTCTGCTATTACAACAATTACAGCCTCACACAGCCAAGATATTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGTTCTCTCAGAAACGTCCCAGTTGGAGGTGGCTCCAGGAAGAACAAGAAGGCCACCTTATCAAAGGTTCCCGACTTGAATCCACCAGTCTCGGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATTTGGCTTTTCCTGCTGCAGCTATTGACAAGTATCATGGCATGTCCCCATATGTTGAGATGCCAAAACTTGAAATTGGTGGTGACAATACCAGTCACCACCATAGCCCTTCTTCTGCTCCAACTTCTCTTTCACCGACATATGGCATGTTGCCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTCATGCCAAGCTCAGATTCACTTTACACACCGATCTATCCCATGCAAGAAATTAAACCAAACCTTAGCTTTTCAGTTGATGGGTTTGGAAATAGATCACACGGGGTTCAAGAGAACGGTGGCGGCGGGAGGCTTTTGTTCCCTTTCGGAGACATCAAGCACCTTTCTGCAGGTGTTGAAGTTGAACACAATAAAGAACAAGGAAATAATCCAACTGGATACTGGACTGGAATCATCGGTGAAGGGTCATCATGGTAA 768 0.4427 MEEIGPNSCARPSLLEKKAKPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKATLSKVPDLNPPVSAISSQNPKMQGVHDLNLAFPAAAIDKYHGMSPYVEMPKLEIGGDNTSHHHSPSSAPTSLSPTYGMLPRGLNPYAPNSFMPSSDSLYTPIYPMQEIKPNLSFSVDGFGNRSHGVQENGGGGRLLFPFGDIKHLSAGVEVEHNKEQGNNPTGYWTGIIGEGSSW 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01522 255 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 119 IPR045174 GO:0003700|GO:0006355
Vimu2g01522 255 MobiDBLite consensus disorder prediction 133 152 - -
Vimu2g01522 255 MobiDBLite consensus disorder prediction 68 91 - -
Vimu2g01522 255 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Vimu2g01522 255 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Vimu2g01522 255 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01522 Vimu-Chr2 10548126 10551046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01522 13 255 C2C2-Dof Transcription Factor Family AT3G61850 47.794 1.42e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu2g01522 zf-Dof 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01522 - - gmx:100775598 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01522 2 10548126 10551046 Vimu9g00073 9 867878 868741 PCT