LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu2g00770	ATGGCTGAGGAGTCTCAAGGGATTAAGCTGTTTGGCGCAATGATTAGACTCAACACTGAGGAGGTCAAGAAGGGAGAAAAAGGAAGGGAGGAGAAAAGAACAGAGAAGATAATACCCTGTCCTAGATGCAAGAGCATGGAAACTAAATTCTGCTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTATTGGACTGCTGGTGGGGCCCTCCGAAACGTCGCTGTCGGAGCCGGCCGTCGGAAGGGCAAGCCGCCGTGTCATGGTGCCGCTGAGTTCCCCGATGGGGCTGTCTATGAAAGTTCGGAAGATGAGAACAAGTTTGAGATGGGAAATAGGCTTGTTTCAGAAGAGGTTCACACTGATTTCCGCCAAATTTTCCCGGCGGCCAAGCGGCGGAGGACTCCATCAGGTGGGTGGTTATCCGTCTCACGCTCTTCTTATCTTATCTGTACTTTTTCTCCGGCGGCCAAGCGGCGGAAGATTCTTATGCATTCCTGTACATGA	528	0.5019	MAEESQGIKLFGAMIRLNTEEVKKGEKGREEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPCHGAAEFPDGAVYESSEDENKFEMGNRLVSEEVHTDFRQIFPAAKRRRTPSGGWLSVSRSSYLICTFSPAAKRRKILMHSCT	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu2g00770	175	ProSitePatterns	Zinc finger Dof-type signature.	40	76	IPR003851	GO:0003677\|GO:0006355
	Vimu2g00770	175	ProSiteProfiles	Zinc finger Dof-type profile.	38	92	IPR003851	GO:0003677\|GO:0006355
	Vimu2g00770	175	PANTHER	CYCLIC DOF FACTOR 2	23	97	IPR045174	GO:0003700\|GO:0006355
	Vimu2g00770	175	Pfam	Dof domain, zinc finger	36	91	IPR003851	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu2g00770	Vimu-Chr2	4693689	4694216	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu2g00770	3	140	C2C2-Dof Transcription Factor Family	AT1G29160	51.190	3.17e-45	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Vimu2g00770		zf-Dof	5.5e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu2g00770	-		-	gmx:100820604	207.608

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu2g00770	2	4693689	4694216	Vimu2g00770	2	4693689	4694216	ECH